Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021331.1 Length=51821 Score E Sequences producing significant alignments: (Bits) Value seq473 84.2 7e-12 >seq473 Length=26706 Score = 84.2 bits (92), Expect = 7e-12 Identities = 222/334 (66%), Gaps = 9/334 (3%) Strand=Plus/Minus Query 13115 GTCCAAAGGCATGTTTTCTTAAAGTACCGATCCCGCGCCGGAATA-ATATCAGGGAAGTC 13173 ||||| || || || ||||| ||| ||| |||| || ||| | ||| ||||| Sbjct 26678 GTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGCGGCGCGATATACATC-GGGAACCA 26620 Query 13174 GGGATGCTTATCATCTTCCGGCAGATAGCAGC-ATAATCGCACGGATGGAACGTATAATC 13232 ||||||| |||| || || ||||||| || ||| || || |||| ||| | | || Sbjct 26619 GGGATGCGCGTCATTCTCAGGAAGATAGCCGCCATACTCCCAGGGATTGAAGGAGTGATT 26560 Query 13233 AGGCTTACGCCATAACGTTGACAGCTTGCCTACAGGATTTTCGATCATGTAAGGAACGCC 13292 || || | |||| | |||||| || || ||||| || || ||||||| ||||| Sbjct 26559 TGGTTTTCTCCATGCAGATGACAGGACGCTCACCGGATTCTCAATTATGTAAGTCACGCC 26500 Query 13293 GAAATAATCAGCGATATGCGCCGCGATTCTGCAAGTGTCGGCGGCCTCATCCTGGAACGC 13352 | ||| | || | ||| || || | | ||| || | || | |||||||| Sbjct 26499 CATGCTATCGCCAATGTTCGCGGCAATACGGGCAGTAGCGACAGCTTTCTCCTGGAATAG 26440 Query 13353 TGGATTC---TCAAGGCGTTTTTTGGTCCAATGGCGAGATCCGCTATTTGCAAGGTCAGT 13409 |||| ||| || || ||| ||||||||| || ||| ||||||||||| Sbjct 26439 CGGATCACGTTCA---CGCTTGCTGGCAAAATGGCGAGCACCACTAACAGCAAGGTCAGT 26383 Query 13410 GCACGGCGGAAATGCCATAATGAAATCAGGCTTG 13443 ||| || | || |||||||| ||||| || ||| Sbjct 26382 GCATGGATGGAAGGCCATAATAAAATCCGGTTTG 26349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165703720794930