Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq174 152 6e-31 seq271 143 3e-28 seq31 140 4e-27 seq297 95.1 1e-13 seq1 86.0 8e-11 >seq174 Length=112626471 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||| | |||||| | || Sbjct 45290098 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 45290039 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| ||||||| || ||||||| |||| | Sbjct 45290038 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 45289979 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 45289978 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 45289919 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 45289918 GCACCTGCTTCAGCACCTTGTA 45289897 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||| | |||||| | || Sbjct 45296974 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 45297033 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| ||||||| || ||||||| |||| | Sbjct 45297034 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 45297093 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 45297094 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 45297153 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 45297154 GCACCTGCTTCAGCACCTTGTA 45297175 >seq271 Length=90843779 Score = 143 bits (158), Expect = 3e-28 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 44793509 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 44793568 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||| ||||| |||||| ||||||| |||| | Sbjct 44793569 TGGTCGAGCGCTTGTTGTAATGCGCTAGACGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44793628 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | ||| ||||||||| ||| |||| Sbjct 44793629 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTAGAAGAGATGCCCGTGTCCGGGT 44793688 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 44793689 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 44793725 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||||||||||||||| || | || Sbjct 43628257 GCTTGGCCAGCTCCCCCGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 43628198 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 43628197 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 43628138 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 43628137 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCCGGGT 43628078 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 43628077 GCACTTGCTTCAGCACCTTGTA 43628056 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 43688897 GCTTGGCCAATTCACCGGGCAGTAGCAGGCGCACGGCTGTCTGGATCTCCCGGGACGTGA 43688956 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||| || |||||| ||||||| |||| | Sbjct 43688957 TGGTCGAGCGCTTGTTGTAATGCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 43689016 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 43689017 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCTGTGTCCGGGT 43689076 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 43689077 GCACTTGCTTCAGCACCTTGTA 43689098 Score = 134 bits (148), Expect = 2e-25 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||||||| || ||||||| ||| || | || Sbjct 44519913 GCTTGGCCAGCTCCCCGGGAAGCAGCAGGCGCACAGCCGTCTGGACCTCCCGGGACGTGA 44519972 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 44519973 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44520032 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 44520033 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCCGGGT 44520092 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 44520093 GCACTTGCTTAAGCACCTTGTACACGTACACCGAGTA 44520129 Score = 134 bits (148), Expect = 2e-25 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| || | || Sbjct 44527474 GCTTGGCCAGCTCCCCAGGAAGCAACAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 44527533 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| || | | Sbjct 44527534 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCAAAGA 44527593 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 44527594 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCCGGGT 44527653 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| ||||||||||| | | || |||||| Sbjct 44527654 GTACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 44527690 Score = 134 bits (148), Expect = 2e-25 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | | |||||||||||| ||||||||||| || | || Sbjct 44738003 GCTTGGCCAACTCCCCGGGAAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 44738062 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 44738063 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44738122 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 44738123 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCCGGGT 44738182 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| ||||||||||| | | || |||||| Sbjct 44738183 GTACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 44738219 Score = 134 bits (148), Expect = 2e-25 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 44757843 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 44757902 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 44757903 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44757962 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||| | ||| | |||| |||||||| ||| |||| Sbjct 44757963 TGTCGTTCACGAACGAGTTCATTATGCCCATGGCCTTGGAAGAGATGCCGGTGTCCGGGT 44758022 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| || |||||||| | | || |||||| Sbjct 44758023 GCACTTGCTTCAGTACCTTGTACACGTACACCGAGTA 44758059 Score = 131 bits (144), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 43809000 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 43808941 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||| ||||||| |||| | Sbjct 43808940 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCTCCCGCGATGCGCTCGAAGA 43808881 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||| || || |||| Sbjct 43808880 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATTCCGGTATCCGGGT 43808821 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 43808820 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 43808784 Score = 131 bits (144), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| ||||| || ||||||||||| || | || Sbjct 44833978 GCTTGGCCAGCTCCCCCGGCAGCAACAGACGCACCGCCGTCTGGATCTCCCGGGACGTGA 44834037 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| || |||||| ||||||| |||| | Sbjct 44834038 TAGTGGAGCGCTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44834097 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 44834098 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCCGGGT 44834157 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 44834158 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 44834194 Score = 123 bits (136), Expect = 3e-22 Identities = 152/204 (75%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGAT-CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCG 1254401 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | | Sbjct 43778649 GCTTGGCCAGCTCCCCGGGCAGCAGGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTG 43778708 Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGA-TGCGGTCGAT 1254460 || || ||||||||| | |||||||||| || ||||||| ||| |||| |||| Sbjct 43778709 ATGGTCGAGCGCTTGTTGTAATGCGCCAGAC-GCGGGCCTCGCCCGCGATTGCGTTCGAA 43778767 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||| || || |||||||||| ||| | |||| ||||| || ||| || Sbjct 43778768 GATGTCGTTCACGAATGAGTTCATGATGCCCATGGCCTTGGAAGAGATACCGGTGTCCGG 43778827 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||| ||||| || |||||||| Sbjct 43778828 GTGCACTTGCTTCAGAACCTTGTA 43778851 Score = 116 bits (128), Expect = 5e-20 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| | | | ||| ||||| || ||||||||||| || | || Sbjct 44748809 GCTTGGCCAACTCCCCGGGAAGCAACAGACGCACCGCCGTCTGGATCTCCCGGGACGTGA 44748750 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| |||| | Sbjct 44748749 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 44748690 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||| | ||| | |||| ||||||||| ||| || | Sbjct 44748689 TGTCGTTCACGAACGAGTTCATTATGCCCATGGCCTTGGAAGAGATGCCCGTGTCCGGAT 44748630 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||| ||||||||||| | | || |||||| Sbjct 44748629 GCACTTGCTTAAGCACCTTGTACACGTACACCGAGTA 44748593 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| || || ||||||||||| || | || Sbjct 43423482 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACAGCCGTCTGGATCTCCCGGGACGTGA 43423423 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 43423422 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGATGCCTCGCCCGCGATGCGCTCGAAGA 43423363 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 43423362 TGTCTGTCACGAAGGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCCGGGT 43423303 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| |||||||| || ||| Sbjct 43423302 GCACTTGCTTCAGCACCTTATAAATG 43423277 Score = 113 bits (124), Expect = 6e-19 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||| | || | || Sbjct 43817703 GCTTGGCCAGCTCCCCG-GCAGCAGCAGGCGCACGGCCGTCTGGATCCC-CGGGACGTGA 43817646 Query 1254403 TCGTGTT-GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | || ||||||||| | |||||||| || ||||| ||||||| |||| Sbjct 43817645 TGGTCCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCTCCCGCGATGCGCTCGAAG 43817586 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| || ||||||||||||| ||| | |||| ||||| || || ||| Sbjct 43817585 ATGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATTCCGGTATCCGGG 43817526 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| ||||| ||||||||||| | | || |||||| Sbjct 43817525 TGCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 43817488 Score = 107 bits (118), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||| ||| || | || Sbjct 44842014 GCTTGGCCAGCTCCCCGAGTAGTAGCAGGCGCACGGCCGTCTGGACCTCCCGGGACGTGA 44841955 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || | ||| || |||||| ||||| | |||| | Sbjct 44841954 TGGTCGAGCGCTTGTTGTAATGAGGCAGGCGCGACGCCTCGCCCGCGATG-GCTCGAAGA 44841896 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGAC-ATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||| || ||||||||||| | | | || | ||| |||||||| ||| ||| Sbjct 44841895 TGTCGTTCACGAACGAGTTCATAAATGCCCATGGCCTTAGAAGAGATGCCAGTGTCCGGG 44841836 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||||| ||||| ||||||||||| | | || |||||| Sbjct 44841835 TGCACTTGCTTAAGCACCTTGTACACGTACACCGAGTA 44841798 >seq31 Length=266435125 Score = 140 bits (154), Expect = 4e-27 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| ||| | || ||||| || ||||||||||| |||| ||| || Sbjct 198361320 GCCAGTTCTCCGGGCAGTAGGAGACGCACCGCCGTCTGGATCTCCCGCGATGTGATTGTA 198361261 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| || |||||| | ||||||| |||| ||||| Sbjct 198361260 GACCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGTTTGCGATGCGCTCGAAGATGTCA 198361201 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||||||||||||||||| ||| | |||| ||||||||| ||| || |||||| Sbjct 198361200 TTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGATGCACC 198361141 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 198361140 TGCTTCAGCACCTTGTA 198361124 Score = 113 bits (124), Expect = 6e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| |||||||| ||||| ||||| || | ||| || ||||||||| | ||||| Sbjct 198418993 CAGACGCACGGCCGTCTGTATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAATGCGC 198418934 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||||||| |||||| ||||||| |||| |||||||| || || || ||||||| Sbjct 198418933 CAGACGGGAGGCCTCACCTGCGATGCGCTCGAAGATGTCGTTCACGAAGGAATTCATGAT 198418874 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| |||||||| ||| |||||||| ||||| ||||||||||| Sbjct 198418873 ACCCATGGCCTTAGATGAGATGCCGGTGTCCGGGTGCACTTGCTTCAGCACCTTGTA 198418817 >seq297 Length=62275575 Score = 95.1 bits (104), Expect = 1e-13 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| ||||| || |||||||| || || | |||||| ||||| Sbjct 25392271 GAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGA 25392212 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | | || || | ||| |||||| || ||||| || || || || || Sbjct 25392211 ACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAG 25392152 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTC--GTCGCTGAGCGACACCCAGTGGA 869810 || ||||| || || ||||| || | ||| || || | |||| | |||||| Sbjct 25392151 AAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTC--CCAGTGCT 25392094 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | || | ||||||||||||||||| ||||| | |||||||| || || |||| Sbjct 25392093 GAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 25392034 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||||| ||| | | ||||| ||| || |||| || || ||| ||| || || Sbjct 25392033 ACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGAAACGGCGGGGATTTTC 25391976 >seq1 Length=282763074 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||||||| || | | || |||||||||||||||||| | || Sbjct 167553494 ACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTC 167553435 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| ||||||||| || | ||| ||||| |||| | | | | | Sbjct 167553434 CGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGAGACTCAATG 167553375 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 167553374 ATGGCGTACCAAAGCTG 167553358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107060828227735