Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq206 86.0 5e-12 seq1 82.4 6e-11 >seq206 Length=52716770 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| ||||| ||||| || || ||||| ||| | || ||| | | Sbjct 36640222 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 36640281 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || |||||| || || || ||| | ||| || || Sbjct 36640282 TGACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 36640341 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || |||||||| || | | || || | |||||||| Sbjct 36640342 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAA 36640401 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || |||||| |||| Sbjct 36640402 CATCCAGAAGGAGTCCACCTTGCACCTGGT 36640431 >seq1 Length=282763074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | ||| |||||||||||| | || | ||| ||| | |||||||| Sbjct 154824702 GATAAGGAAGGAATCCCCTCTGATCAGCAGAGATTGATCTTTGCTGGTTAGCAGCTGGAA 154824761 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | | | | |||||||||||||||||||||||||| | || | |||||| Sbjct 154824762 GATGGCTGTA----GTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 154824817 Query 107769 AGATTGCGAGG 107779 ||||| || || Sbjct 154824818 AGATTTCGTGG 154824828 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | ||| |||||||||||| | || | ||| ||| | |||||||| Sbjct 154914806 GATAAGGAAGGAATCCCCTCTGATCAGCAGAGATTGATCTTTGCTGGTTAGCAGCTGGAA 154914865 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | | | | |||||||||||||||||||||||||| | || | |||||| Sbjct 154914866 GATGGCTGTA----GTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 154914921 Query 107769 AGATTGCGAGG 107779 ||||| || || Sbjct 154914922 AGATTTCGTGG 154914932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398872157447995