Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq206 111 1e-19 seq97 109 4e-19 seq1 100 2e-16 seq312 96.9 3e-15 seq55 91.5 1e-13 seq286 82.4 6e-11 >seq206 Length=52716770 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || | ||||| || || || ||||| || || | | |||||| | Sbjct 36640437 CGAAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA 36640378 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||| || ||||| || || || || ||||| ||| Sbjct 36640377 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 36640318 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| |||| | |||||| | || || || || || || Sbjct 36640317 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 36640258 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || |||||||||||||| ||||| ||||||||| Sbjct 36640257 GTCTTACCAGTTAAGGTTTTCACAAAGATCTGCATT 36640222 >seq97 Length=173707219 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||| || ||||| || ||||||||||| || || | | || || ||| Sbjct 138628772 CAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 138628831 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | || || |||||| | ||||| || |||||||| || ||||| || || || || Sbjct 138628832 TTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 138628891 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || || || || || || Sbjct 138628892 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 138628951 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || ||||| |||||||| Sbjct 138628952 CTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||| || ||||| || ||||||||||| || || | | || || ||| Sbjct 159895309 CAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 159895250 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | ||||| || |||||||| || ||| | || || | || Sbjct 159895249 TTCTAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCCTTCCTCATC 159895190 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| || | || || || || Sbjct 159895189 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGT 159895130 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | | ||| || ||||| ||||||| Sbjct 159895129 CTTCCCTATAAGGGTCTTTACAAAACTCTGCAT 159895097 >seq1 Length=282763074 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||| || ||||| || ||||||||||| || || | | || || | | Sbjct 255573165 CAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCACC 255573224 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | | ||| || |||||||| || ||| | | || || || Sbjct 255573225 TTCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAGTTTCTTCCTTATC 255573284 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| ||||| || || || || Sbjct 255573285 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACTTCGAGCGTGATGGT 255573344 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || ||||| |||||||| Sbjct 255573345 CTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 255573377 >seq312 Length=159970021 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||||| ||| ||| |||| || ||||||||||| || || | | || || ||| Sbjct 72456627 CAGCACCAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 72456686 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || | |||||| | ||||| || |||| ||| || ||||| || || | || Sbjct 72456687 TTCCAGCTGCTCACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTCCTCATC 72456746 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| || |||| | || || || | || Sbjct 72456747 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCGAGCGTGAGGGT 72456806 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||| || ||||| |||||||| Sbjct 72456807 CTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 72456839 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | |||| | ||||| || ||||||||||| | || | | || || | | Sbjct 104255425 CAGCACGAGATGA-GAGTGGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGGCCACC 104255367 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | | ||| || |||||||| || || | || || || | Sbjct 104255366 TTCCAGCTGCTTACCAGCAAAGACCAAACTCTGCTGATCAGGAAGAGTTCCTTCCTTATT 104255307 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 | || || || ||| |||||| |||||| || ||||| || |||| || || || Sbjct 104255306 CTAGAACTTGGCCTTTACATTTTCTATAGTGTCTGAGAGTTCAACCCCAAGCGTGATGGT 104255247 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| || ||||| |||||||| Sbjct 104255246 CTTCCCTGTAAAGGCCTTCACAAAAATCTGCAT 104255214 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||| ||| |||| || ||||||||||| || || | | || || ||| Sbjct 37026617 CAGCACGAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 37026558 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | | ||| || |||||||| || ||||| || || | || Sbjct 37026557 TTCTAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAATTCCTTCCTCATC 37026498 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG 29744 || | || || ||| |||||| |||||| || |||| || ||||| Sbjct 37026497 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAG 37026447 >seq55 Length=177699992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 || |||||| | ||| || ||||| || ||||||||||| || || | |||| || | Sbjct 38853846 ACTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCTGACAATACGGCCA- 38853904 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | || || |||||| | ||||| ||||||||||| || ||||| || || | Sbjct 38853905 --TCTTCTGGCTGCTTACCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATTCCTTCCT 38853962 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | || || | || || ||| ||||| |||||| || |||| || || || | | Sbjct 38853963 TATCCTGGATCTTGGCCTTTACATCTTCTATAGTGTCCGAGGGTTCAACCTCGAGCATGA 38854022 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 | || || || | | || || ||||| ||||||| Sbjct 38854023 TGGTCTTCCCTGGAAGGGCCTTCACAAAAATCTGCA 38854058 >seq286 Length=88201929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | ||| || ||||| || ||||||| ||| || || | | || || | | Sbjct 25394603 CAGCACGAGATGGAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAAGTACGGCCACC 25394662 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || ||||| || |||| ||||||||||| || ||| | || || | || Sbjct 25394663 TTCCAGCTGCTTACCAGCGAATGTCAACCTTTGCTGATCAGGAGGAGTTCCTTCCTCATC 25394722 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | | || ||| |||||| |||||| || |||| || || || | || || Sbjct 25394723 CTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCATGATGGT 25394782 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | | ||| || ||||| |||||||| Sbjct 25394783 CTTCCCTATAAGGGTCTTCACAAAAATCTGCAT 25394815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385214716409655