Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq206 91.5 1e-13 >seq206 Length=52716770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 203/298 (68%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 21001 AAAGTTT-ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA 21059 ||| ||| ||||||||||| |||||||| || ||||| ||||||||||| | | | Sbjct 40874480 AAACTTTGATGTATTATGTGAATGATGGAGTGTATGGATCATTTAACTGCATTCTTTATG 40874539 Query 21060 ACCATGCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTAT 21118 ||||||| | | | | | |||||| || ||| | ||| || || || | || Sbjct 40874540 ACCATGCACATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTAC 40874598 Query 21119 GTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAA 21178 || ||||| ||| | || | || |||||| | ||| | ||||| |||| ||| Sbjct 40874599 TCATCCAGCATCTGGAGACCAACATGTGATGGCCTTGATCGGATTGTCGAGCGCTGTAGC 40874658 Query 21179 CTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTG 21238 ||||| || | || ||||| || ||| | | ||||| |||||||| || |||| || Sbjct 40874659 CTGCCTGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACA-CTGT 40874717 Query 21239 GTCAGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | ||| |||| || || || || |||| | |||| | | ||||||| || ||| Sbjct 40874718 TGCTGCTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCA 40874775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463540066424400