Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq189 109 6e-19 >seq1 Length=282763074 Score = 223 bits (246), Expect = 4e-53 Identities = 574/873 (66%), Gaps = 6/873 (1%) Strand=Plus/Minus Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || |||||||| || ||||| || || || |||||||| ||||| | || |||| Sbjct 236581982 TCCAAAGACGCACACAGAGCGCACATGGACTCCACTGCACGGTGGATAAGGCGCGCCATT 236581923 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||| || ||| ||||||||||||| || ||||||| || ||| | |||||| || Sbjct 236581922 GGAAACATCGCCTTCGAAGTATTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAGA 236581863 Query 162300 GGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||| ||||| | ||| || | | ||||| || | || | || || | || Sbjct 236581862 CAAGTCATACTTATGGCTTGAGGGGAGAGAACCAGGGACTTCAGGGATCCTTTGGATGGT 236581803 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 ||||| ||| || || || || || || |||| | ||| |||||||||| | Sbjct 236581802 GGCCCAGAGGAACTCATCCGGGCTGTATGTGTCCTGTGCCCATTCCATGAACTTTTGAAT 236581743 Query 162420 CGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC 162479 |||||| | || | || || || ||| || || | || || ||||| || Sbjct 236581742 ATTTTTATTTTCCAGCACATAGCCTACATATTCCCTAGTGACCACGAAATAGGCGCTGCC 236581683 Query 162480 AGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||| | || | || || ||||| || | ||| | || ||||| | Sbjct 236581682 TGAAAAGAGAGGAGTTTTGAGT---GGAGGCTGCGCCTTGACAACTCCAGTGTTTGTCAG 236581626 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTG 162596 | | || || || ||| || || || ||||||| | ||| ||| || | | Sbjct 236581625 CTTCCCGTCCACAACCGTGTATCGTTTTTTCCACCTCTCTTCCTTGTTGGGAGGCATCTT 236581566 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 || || || || ||||| || |||| ||| |||| | || || || || || Sbjct 236581565 CTCAGTTTCCAGGCTGTTTTCCCCTGTGAAGGACTTGAGCTTCCTGACAATTTCCAGGTT 236581506 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 ||| |||| || || || | || || ||||| || | || ||||| || | | | Sbjct 236581505 GGTTTTAATAGGGAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCATTCAT 236581446 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || |||||| |||| | ||||| || || |||| || |||||||| || ||||| || Sbjct 236581445 TCTGTACAGGTCCTTCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGAGGCGTATAC 236581386 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || ||||||||| |||| ||||||||||| || || || || | || ||| ||| Sbjct 236581385 AACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCAATGCCCTGCAC 236581326 Query 162837 GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 || | | || || ||||| || || ||||| | |||||| | ||||||||| Sbjct 236581325 CGCGGCTAAAAAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGG 236581266 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 |||||||||||||| | || || | ||| || |||||||| || ||||| || || Sbjct 236581265 CATATAGATGGCCCTCAGGAGCCTGTCAAGCATGTCAATCTTATGATGAACCACTATGGA 236581206 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGTC 163016 ||| || || || || || |||| || | | || | | | ||| || ||||| Sbjct 236581205 ATATGCAATTGGAAAGCCAACCTCTTCTTTAGTAAGGGGCTCCATAATATATTTGCGTGT 236581146 Query 163017 CCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 ||| | || | || |||||| |||||||| Sbjct 236581145 CCTGATGAAGGAGGCGCAGTCCCGGGTCATGTT 236581113 >seq189 Length=90463843 Score = 109 bits (120), Expect = 6e-19 Identities = 148/203 (73%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||| ||||||||| ||| || | ||| ||||| |||| |||| || ||| |||| || Sbjct 60385802 ACATTCCCCAAGTATAAAACCTGGCAGATCACTTCCT---TTCCAACCTGAGTTTTGGGG 60385746 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACG-GTTTT 171642 ||||| || | || ||||| || |||||||||||||| || ||| || | | | Sbjct 60385745 TCTTTGACCCGGAGGATGCTGGTGACAGATGTAGTCCCATTTGAATG-GGAGTGACTCTC 60385687 Query 171643 AGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGC 171702 ||||||||| || ||||| || || | | ||||| | || |||| ||||| | || Sbjct 60385686 AGTACTATTCTCAATTCCTGACCCAGTGCCCTTCCAGGAGATGGCAGGGGCTGGGCGGGC 60385627 Query 171703 AGTAGCAGAGCAAGTTATGTTTA 171725 ||| |||||||| || ||||||| Sbjct 60385626 AGTTGCAGAGCACGTGATGTTTA 60385604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578425094968000