Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq97 136 1e-27 seq80 136 1e-27 seq1 118 3e-22 >seq97 Length=173707219 Score = 136 bits (150), Expect = 1e-27 Identities = 271/389 (70%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201 ||||| || |||||||| || ||||| || || |||||||| || |||||||||||||| Sbjct 173429909 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 173429968 Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCT-GCCATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260 |||||||| || ||||| |||| ||| ||||||||||||||||| || |||| | Sbjct 173429969 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 173430027 Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGCG 18318 | ||| ||||||| ||||| | | | || | ||| ||||| | | ||| Sbjct 173430028 GGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG-A 173430085 Query 18319 TTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGC 18378 |||| |||| | ||||| ||||||||| || ||||||||| ||| || || | Sbjct 173430086 TTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTC 173430145 Query 18379 AGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-AT 18436 | ||| || |||||||||| || ||| | | || || || | || || Sbjct 173430146 ATGATGGTGGTGCGGTCCGGCAAGGCGC-TATCCAGGGATAACCGGGCAAACAGACGCAT 173430204 Query 18437 ACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGC 18495 | ||| | |||||||| || ||||||||||| | || |||| | |||| ||| Sbjct 173430205 GGA--GGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGC 173430262 Query 18496 TGCAGAAAGTGGATGCGCAGCATCGTTTC 18524 |||| |||| ||||| ||||| ||||| Sbjct 173430263 TGCATGCAGTGAATGCGTAGCATGGTTTC 173430291 >seq80 Length=184226339 Score = 136 bits (150), Expect = 1e-27 Identities = 271/389 (70%), Gaps = 12/389 (3%) Strand=Plus/Minus Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201 ||||| || |||||||| || ||||| || || |||||||| || |||||||||||||| Sbjct 157607719 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 157607660 Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCT-GCCATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260 |||||||| || ||||| |||| ||| ||||||||||||||||| || |||| | Sbjct 157607659 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 157607601 Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGCG 18318 | ||| ||||||| ||||| | | | || | ||| ||||| | | ||| Sbjct 157607600 GGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG-A 157607543 Query 18319 TTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCGC 18378 |||| |||| | ||||| ||||||||| || ||||||||| ||| || || | Sbjct 157607542 TTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTC 157607483 Query 18379 AGAATGCTGACCCGGTCCGGCAGTCGGCTTATGC-CTCCCAGCCCCGCGAATTGCCG-AT 18436 | ||| || |||||||||| || ||| | | || || || | || || Sbjct 157607482 ATGATGGTGGTGCGGTCCGGCAAGGCGC-TATCCAGGGATAACCGGGCAAACAGACGCAT 157607424 Query 18437 ACAACGGC-ACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGC 18495 | ||| | |||||||| || ||||||||||| | || |||| | |||| ||| Sbjct 157607423 GGA--GGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGC 157607366 Query 18496 TGCAGAAAGTGGATGCGCAGCATCGTTTC 18524 |||| |||| ||||| ||||| ||||| Sbjct 157607365 TGCATGCAGTGAATGCGTAGCATGGTTTC 157607337 >seq1 Length=282763074 Score = 118 bits (130), Expect = 3e-22 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18142 GCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTGGTTACCTTTCTTGGTCTGG 18201 ||||| || |||||||| || ||||| || || |||||||| || |||||||||||||| Sbjct 162985023 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 162985082 Query 18202 TGCATCTCGGGGTCGCGCTTGCCGCT-GCCATTCTTGGTCGAGCTGGGCGCGGCAATCAG 18260 |||||||| || ||||| |||| ||| ||||||||||||||||| || |||| | Sbjct 162985083 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 162985141 Query 18261 CGAGGCGTCGACCACCGTGCCCTCTTTGAGCAGGTAGCC--CTTCGCACTGAGTTGCGCG 18318 | ||| ||||||| ||||| | | | || | ||| ||||| | | ||| Sbjct 162985142 GGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAG-CCAGCG-A 162985199 Query 18319 TTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTG 18368 |||| |||| | ||||| ||||||||| || ||||||||| ||| Sbjct 162985200 TTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTG 162985249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127883349706440