Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq206 86.0 4e-12 >seq206 Length=52716770 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| | || |||| || || || ||||| Sbjct 36640414 CTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 36640355 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| | |||||| || | || | || || ||||| || || || | |||| Sbjct 36640354 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT-TGCCTTGACAT 36640296 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| |||||| || | || || || | ||||| || ||||| ||||| ||||| | Sbjct 36640295 TTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCA 36640236 Query 33737 CAAAGATCTGCATAGT 33752 ||||||||||||| || Sbjct 36640235 CAAAGATCTGCATTGT 36640220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700174193600