Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 seq97 84.2 2e-11 seq174 82.4 7e-11 >seq1 Length=282763074 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || || || | ||||||||||||||| || ||| ||||| || ||||| | Sbjct 167553502 TGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 167553443 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| ||||| || || | ||||||| |||||||||| || ||| ||||| Sbjct 167553442 TGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 167553391 >seq97 Length=173707219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||||| |||||| | ||| ||||| | | Sbjct 138628791 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTACCAGCA 138628850 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| ||||| ||||| || ||||| ||||| || || || | Sbjct 138628851 AAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 138628910 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | || || || |||| ||| | || || || || || || || Sbjct 138628911 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTC 138628970 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 138628971 ACAAAAATCTGCAT 138628984 >seq174 Length=112626471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| || | | ||||||| || || ||||||||||| | ||| || |||||| Sbjct 48881494 ACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCC 48881435 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| || | ||| || || || || ||||| |||||||| Sbjct 48881434 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 48881375 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | |||||||| || | || | || || Sbjct 48881374 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTG 48881315 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||| || || | ||| ||||||||| Sbjct 48881314 CCGGTCAGGGTCTTCACGAAGATCTGCATG 48881285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605510453800