Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_026010.1 Length=50109 Score E Sequences producing significant alignments: (Bits) Value seq572 892 0.0 seq473 800 0.0 >seq572 Length=2924 Score = 892 bits (988), Expect = 0.0 Identities = 670/783 (86%), Gaps = 13/783 (2%) Strand=Plus/Plus Query 43473 CTCACAGTCCGCACTTTTCGATATGCGCTTTCATCTGGCGAACCAGGTCGCGCACGGTGC 43532 || ||||||| ||||||||||||||||||||||||||| |||| | ||| ||| Sbjct 2103 CTTACAGTCCACACTTTTCGATATGCGCTTTCATCTGG-GAACGATCTCGTTTACG---- 2157 Query 43533 TTAC-AGCCACGTCACCTTTCT-----CAAGGTCATCAATATCAGGAACAAACGAGTCCA 43586 | || || || ||| | || | || | | | |||| |||||||| |||| Sbjct 2158 TCACGAGTCA--TCAATTCGCTATCAGCCAGTTTGCCCACATCAACCACAAACGAATCCA 2215 Query 43587 GGCAGTCGGACAGGCTAACTTTTTTCCGGCTACGGCGCTTCTTCACCGGAACCTCTTCAT 43646 |||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||| | Sbjct 2216 GGCAATCGGCCAGGCTAACTTTTTTCCGACTGCGGCGCTTCTTCACGGGAACCTCTTCGT 2275 Query 43647 CAGTAACGGTAACGGTTATCATTGTGATTGCCGACTCATTCCGGCCCACCTTCACCTTTG 43706 | |||||| |||| ||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 2276 CGGTAACGATAACCGTTATCATTGTGATTGCAGCGTCATTCCGGCCTACCTTCACCTTTG 2335 Query 43707 CCATCTTGCCGTACTTGCAGAAGTGCCGGGTAATAATCGGAGTGATGAAAGCAGACTTAA 43766 ||| |||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||| | Sbjct 2336 CCACCTTGCCATACTTGCAAAAGTGCCTGGTAATGATCGGAGTGATGAAAGCGGACTTGA 2395 Query 43767 ATCGCTTCTCCACCTCCTTCCCGTTCGAGGTCAACCATGTTGATACACCTCGCTCAATCT 43826 |||||||||| |||||| | |||| | || |||| | | | |||| | Sbjct 2396 ATCGCTTCTCTACCTCCCCCTGGTTCTGGTCCACCCATCCGGCAGCGGCAGATTCAAGAT 2455 Query 43827 CTTCCTCTGTAATATCCCGATCTCGGAAGTAAAATTTTACCGCCTCTCTCGCCATATCAT 43886 | || || | | ||| | || |||||||| ||| | ||||| |||||||||| Sbjct 2456 CGTCATCACTTACCTCCTGGTCACGGAAGTAGAATCGCGCGGCCTCGAGGGCCATATCAT 2515 Query 43887 CAGCCAAGAAAGAGAACTCGGTCATGCCTTTGTCGCGATACATTGCGTCGCAGGTTAGGC 43946 |||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||| Sbjct 2516 CAGCCACGAAAGAGAACTCATTCATGCCTTTGTCGCGGTACATTGCATCGCAGGTTAGGC 2575 Query 43947 GAATCATGTCGGTGATTTTTAATTCCTGACTGGTATTGCTCATAATATATCCTCTTTGTC 44006 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2576 GAATCATATCGGTGATTTTTAACTCCTGACTGGTATTGCTCATAATATATCCTCTTTGTC 2635 Query 44007 TATTCGCGTGTAAATGGTGTCATAATGTGTCAACAATTGCCATTGTGACATCTCGATGTA 44066 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2636 TATTCGTGTGTAAATGGTGTCATAATGTGTCAACAATTGCCATTGTGACATCGCGATGTA 2695 Query 44067 GAGCTGTCAATGCCTGCGAGCCAATTTTAAGCCGTGTAACATTTGTCTAGCTGTCTATAG 44126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2696 GAGCTGTCAATGCCTGCGAGCCAATTTTAAGCCGTGTAACATTTGTCTAGCTGTCTATAG 2755 Query 44127 CCACTATAGAAATATATGGCTCTCaaaaaaaGTACTGTATATATAAACACTCAGATAGAA 44186 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2756 CCACTATAGAAATATATGGCTCTCAAAAAAAGTACTGTATATATAAACATGCAGATAGAA 2815 Query 44187 ATATGCCAACAGTACGCTAGACAATGTAAGACAGCTATACACAACTATTACAATATAATT 44246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2816 ATATGCCAACAGTACGCTAGACAATGTAAGACAGCTATACACAACTATTACAATATAATT 2875 Query 44247 ATC 44249 ||| Sbjct 2876 ATC 2878 >seq473 Length=26706 Score = 800 bits (886), Expect = 0.0 Identities = 522/572 (91%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 44814 AATGAAGTTGATTTGGTCGCTATTCGACGGTTCCGGCCTGGCAGGTCATGAACTGGCAAA 44873 |||||| || |||||||| ||||||||||||||||| || || || |||||||||||||| Sbjct 26136 AATGAAATTAATTTGGTCACTATTCGACGGTTCCGGTCTTGCTGGCCATGAACTGGCAAA 26195 Query 44874 GCAAGGTCATAAGGTGATGTGCTTCAACTTTGACGGGGCAGATCACGGAGATTACGCAAA 44933 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 26196 GCAAGGTCATAAGGTGATGTGCTTCAACTTTGACGGAGCCGATCACGGAGATTACGCAAA 26255 Query 44934 GTACAATGCCCGGGTAGAGCATCCGAACATTGAGTATGTGAACGTCTTCATTGATGAGAA 44993 |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26256 GTACAACGCCAGGGTAGAGCATCCGAACATTGAGTATGTGAACGTCTTCATTGATGAGAA 26315 Query 44994 GTTCGAACGTGATGCGATCGCTGGTGTGTATGGCAAACCTGATTTCATCATGGCTTTCCC 45053 ||||||||||||| ||||||| |||||||||| |||||| ||||| || ||||| |||| Sbjct 26316 GTTCGAACGTGATACGATCGCGGGTGTGTATGACAAACCGGATTTTATTATGGCCTTCCA 26375 Query 45054 ACCATGCACTGACCTAGCTGTTAGTGGTGCTCGCCATTTTGCCAGCAAGCGTGAACGTGA 45113 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 26376 TCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCATTTTGCCAGCAAGCGTGAACGTGA 26435 Query 45114 TCCGTTATTCCATGAGAAGGCTGTTGCCACCGCTCGGATTGCTGCTAATATTGGCGA-AG 45172 |||| ||||||| ||||| ||||| || || || || ||||| || || |||||||| || Sbjct 26436 TCCGCTATTCCAGGAGAAAGCTGTCGCTACTGCCCGTATTGCCGCGAACATTGGCGATAG 26495 Query 45173 CTATGGGCGTGACGTACATCATTGAGAATCCGGTTAGCGTCCTGTCATCTGCCTGGAGAA 45232 | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 26496 C-ATGGGCGTGACTTACATAATTGAGAATCCGGTGAGCGTCCTGTCATCTGCATGGAGAA 26554 Query 45233 AACCAGATCACTCCTTTAATCCCTGGGAGTATGGCGGCTATCTTCCTGAGAATGACTCAC 45292 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | | Sbjct 26555 AACCAAATCACTCCTTCAATCCCTGGGAGTATGGCGGCTATCTTCCTGAGAATGACGCGC 26614 Query 45293 ATCCCTGGTTCCCGATGTATATTGCGCCGCGCGATGCTTACCCTAAGAAGACGTGTCTTT 45352 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 26615 ATCCCTGGTTCCCGATGTATATCGCGCCGCGCGATGCTTACCCGAAGAAGACTTGTCTGT 26674 Query 45353 GGACCTCGGACGATTTTGTCATGCCGGAGAGA 45384 ||||||| ||||| || || |||||||||||| Sbjct 26675 GGACCTCTGACGACTTCGTTATGCCGGAGAGA 26706 Score = 217 bits (240), Expect = 5e-52 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 44497 GTTGCACACCATGCAATAATCACGTTTCATCATTCGTAATCAATAACAATCAAGATTATT 44556 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 25957 GTTGCACACCATGCAATAATCACGTTTCATCATTCGCAATCAATAACAATCAAAATTATT 26016 Query 44557 CCACCTATTCCAGTATTGATTGAATAATGAGCAATTATTGGAATAGCATTTTTTGCTAAC 44616 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 26017 CCACCTATTCCAGTATTGATGGAATAATGAGCAATTATTGGAATAGCA-TTTTTGCTAAC 26075 Query 44617 GACTTAGCAAGGCCGATTGGGTATGATTCATCACATCAACCAATCAGGAG 44666 |||| | ||| || |||||| ||| |||||||||||||| || Sbjct 26076 GACTCGACCAGGTTGACAGGGTATAGTTCGGGCCATCAACCAATCAGAAG 26125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160225382923410