Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1 107 6e-20 seq271 100 9e-18 seq243 98.7 3e-17 seq206 98.7 3e-17 seq129 98.7 3e-17 seq312 93.3 1e-15 >seq1 Length=282763074 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 228441628 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 228441687 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 228441688 CCGGGTTTCAGC 228441699 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 228434808 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 228434867 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 228434868 CCGGGTTTCGGC 228434879 >seq271 Length=90843779 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 45642227 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 45642168 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 45642167 CCCGGGTTTCGGC 45642155 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | | Sbjct 44705696 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCTTGGTTCGATC 44705755 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 44705756 CCGGGTTTCGGC 44705767 >seq243 Length=111246239 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 103297395 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 103297336 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 103297335 CCGGGTTTCGGC 103297324 >seq206 Length=52716770 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 36623201 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 36623260 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 36623261 CCGGGTTTCGGC 36623272 >seq129 Length=145729302 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 12326479 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 12326538 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 12326539 CCGGGTTTCGGC 12326550 >seq312 Length=159970021 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCT-AAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| | Sbjct 70556081 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGGTCCCTGGTTCGAT 70556140 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 70556141 CCCGGGTTTCGGC 70556153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849434445975