Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq189 170 2e-37 seq166 129 7e-25 seq219 116 4e-21 seq154 100 3e-16 >seq189 Length=90463843 Score = 170 bits (188), Expect = 2e-37 Identities = 229/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| | || ||| | || || || Sbjct 60383248 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACAACTGCATCCTTACGCTGTTCTCTA 60383307 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || | ||||| ||||||| || |||||||||| || || ||||| Sbjct 60383308 AAAACAACCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAGGCCCAGAA 60383367 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| ||| ||||| || | ||||| | || | |||| | Sbjct 60383368 AACATGGTCACTTACAGCAAAGCCCATGGGGTTGTCATTCAGCCCACCTACAGAGACAGG 60383427 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| |||| |||||| ||| ||| |||||| || ||||| || ||| | Sbjct 60383428 ATAAACATCACTGAGCTGGGACTCTTGAACACAAGCATCACCTTCTGGAACACAACCCTG 60383487 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| |||| ||||| |||||||| |||| ||| Sbjct 60383488 GATGATGAGGGTTGCTACATGTGTCTCTTCAACATGTTTGGATCTGGGAAGGTCTCTGGG 60383547 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||| || |||| Sbjct 60383548 ACAGCTTGCCTTACTCTCT 60383566 Score = 154 bits (170), Expect = 2e-32 Identities = 186/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 60385558 GTACAGCCCATAGTACACCTTCACTACAACTATTTTGAAGACCACCTAAACATCACGTGC 60385617 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || | |||||| | ||||||| |||||| Sbjct 60385618 TCTGCAACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGGTCAGGAATTGAG 60385677 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || |||||||| ||||| ||||| ||||| ||||| | |||| Sbjct 60385678 AATAGTACTGAGAGTCACTCCCATTCAAATGGGACTACATCTGTCACCAGCATCCTCCGG 60385737 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||| | |||| | |||||||| || |||||||| || | || |||| Sbjct 60385738 GTCAAAGACCCCAAAACTCAGGTTGGAAAGGAAGTGATCTGCCAGGTTTTATACTTGGGG 60385797 Query 171633 AATGTAACTAACT 171645 ||||| | | ||| Sbjct 60385798 AATGTGATTGACT 60385810 >seq166 Length=122095297 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||| ||||| | |||||||| ||||||||||| Sbjct 121921524 AGGCCCGTGATATGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGGC 121921583 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || |||| |||||| |||||||| || |||||||| | || Sbjct 121921584 ACACCCAGACCCATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 121921643 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || ||||| || || ||| ||||| || ||||| ||||| Sbjct 121921644 ACATAAAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 121921684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || | Sbjct 121928301 GCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTCTCCTTCCTGTCGGGCA 121928360 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || ||||||| | ||| ||||| || | ||||||| Sbjct 121928361 GAGAATCCCAAGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAAATTCTCACTCCC 121928420 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||||||| Sbjct 121928421 TTGGAGGACAGTTCTTTAGCATTTGTGGAGCCC 121928453 >seq219 Length=114033958 Score = 116 bits (128), Expect = 4e-21 Identities = 113/148 (76%), Gaps = 12/148 (8%) Strand=Plus/Plus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || ||||||||||||||||||| ||||||||||| ||||| |||||||| ||| || | Sbjct 47740904 TTTAGGGTTACTTGGGTTGCCAAGCCTTGTCAGAAATGATCAAGTTTTACCTGGTAGAAG 47740963 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| ||||| ||||| || ||||| || || ||||||||| | | Sbjct 47740964 TGATGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGA 47741011 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCT 178375 | || ||||| || ||||| |||||||| Sbjct 47741012 ATTCCCTGGGAGAGAAGCTGAAGACCCT 47741039 >seq154 Length=133307652 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | |||| | || ||||||| ||||||| | || || ||||| Sbjct 133128168 GTACTCGCTGGTGTTTGTCATTGGTGTGATAGGCAATGTCCTGGTGGTTCTGGTGCTCAT 133128109 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | | ||||||||| | | |||||||| ||||| ||||||||||||||| | ||| Sbjct 133128108 ACAACGCAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTGA 133128049 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| || || || ||| || ||| Sbjct 133128048 TCTGGTCTTTCTATTCACACTACCTTTCTGGGTTGACT 133128011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 8663 TCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCC 8722 ||||||||||||||| || ||| || ||||| || |||| ||| ||||| |||| Sbjct 133038085 TCCTCATAAAGTACAGGAAGCTGCAAATTATGACTAATATCTACCTACTCAACTTGGCAA 133038144 Query 8723 TTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGA 8781 || ||||||||| | | ||||| |||| || |||||||||| | || | ||| Sbjct 133038145 TTTCTGACCTGCTCTTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTCT---GTGGA 133038201 Query 8782 ACTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTG 8841 | || ||||| | |||| ||||||||| | | || |||| || || Sbjct 133038202 A----TGAGTGGGGTTTTGGCCACTGCATGTGTAAAATGCTCTCTGGGCTTTATTACCTG 133038257 Query 8842 GCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 || |||||||||| || | || ||||||||| |||| | |||||||| || || Sbjct 133038258 GCCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACAATCGACAGGTACCTGGC 133038313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 199/297 (67%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||| | |||||| | |||| | | |||||| ||||||||| || || ||||| Sbjct 132998025 GTACTCTTTCGTGTTTATCATTGGAGTGGTAGGCAATATCCTGGTGATTCTGGTGCTCAT 132997966 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | | |||||| | |||||||| ||| | ||||||||||||||| | ||| Sbjct 132997965 GCAGCATAGGAGGCTTCAAAGCATGACCAGCATATACCTGTTCAACCTGGCTGTCTCTGA 132997906 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACT-GGT 8787 ||| | | ||||||| | || || |||||| ||| | | || | |||| ||| Sbjct 132997905 TCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACTACAAGCTGAAAGACAACTGGGT 132997846 Query 8788 GGGTGG-GACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 ||| || || |||||||||| || | || ||| || ||| | Sbjct 132997845 TTTTGGTGATGC---------CATGTGTAAGCTTCTCTCTGGGTTTTATTACCTGGGCTT 132997795 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||||| || || | |||||||||||| |||| | |||||||| || || |||| Sbjct 132997794 ATACAGTGAGATCTTCTTTATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGT 132997738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583481034612000