Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq219 86.0 9e-12 >seq219 Length=114033958 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 214007 GGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAACCCAGC 214066 || || || || ||||| || ||||| || | | || | ||| | ||| ||| | Sbjct 67355025 GGAGAGGTGTATCCTCCCACAGTCAAAGACACTCAGGTAGACATGATCTACCCTCCCCAC 67355084 Query 214067 GTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTC 214126 || || || | | || ||||| |||| | || | ||||| || ||||| ||| | Sbjct 67355085 GTCCCTGAGCACCTGCGGTTCGCTGTGGGGCAGGAAGTCTTTGGTCTGGTGCCGGGTCTG 67355144 Query 214127 ATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAA 214186 ||| |||| || | |||||||| | ||||||||||| || || || | || ||||| Sbjct 67355145 ATGATGTATGCTACCATCTGGCTTCGGGAGCACAACAGAGTGTGTGATATACTCAAACAG 67355204 Query 214187 GAGCACCCGGAATGGAACGACGAACAGCTGTTCCA 214221 ||||| || || ||| | ||||| | |||||||| Sbjct 67355205 GAGCATCCTGAGTGGGATGACGAGCGACTGTTCCA 67355239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723332165119200