Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq764 1472 0.0 >seq764 Length=2831 Score = 1472 bits (1632), Expect = 0.0 Identities = 906/963 (94%), Gaps = 2/963 (0%) Strand=Plus/Minus Query 62721 TCTTCTCTAGTCCAACATAGCTCGCTATTGTGCCAGGTCCGATGTTGCCGTCCACGACTA 62780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2831 TCTTCTCTAGTCCAACATAGCTCGCTATTGTGCCAGGTCCGATGTTGCCGTCCACGACCA 2772 Query 62781 CCTTCGGGAAATCCTTGCCGTCCCGGCTCACGGCATTCAGCCCACGCTGGAACCAGAGGG 62840 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2771 CCTTCGGGAAATCCTTGCCGTCACGGCTCACGGCATTCAGCCCACGCTGGAACCAGAGGG 2712 Query 62841 ACATTTGCCGTGTGCCTACGTTTACGCCACCGTCGATCACCCGTTTGCCCAGCGCAGGAC 62900 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| | Sbjct 2711 ACATTTGCCGTGTGCCCACGTTCACGCCTCCGTCGATCACCCGTTTGCCCAGGGCAGGGC 2652 Query 62901 TGCGGGCCACGATCTCGGTGAAGCCCGGCTTGTGCACGTAGCTCTCGGCGTAGATATCCA 62960 | ||||||||||| || ||| || || || ||||||||||||||||||||||||| Sbjct 2651 TACGGGCCACGATGCCGTCGAACCCAGGGGCGTAGACGTAGCTCTCGGCGTAGATATCCA 2592 Query 62961 GGGCAGTCTCCACCGGCAGGTCTCGCATGTCGCCGGTGTAGTCGTGGGCCCGAGCCACCT 63020 | || ||||||||||| |||||| ||||||||||||||| |||||||| || ||||||| Sbjct 2591 GAGCGGTCTCCACCGGGAGGTCTTTCATGTCGCCGGTGTAATCGTGGGCACGGGCCACCT 2532 Query 63021 TCTCGGTGATGCCGTGATTGGTGGCACCGCCAGGATCTTTCGGGTTGTTGGAGTAGCCCT 63080 |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||| Sbjct 2531 TCTCGGTGATGCCGTGGTTGGTAGCACCGCCAGGATCCTTGGGGTTGTTGGAGTAGCCCT 2472 Query 63081 GCTCCAGAGCCACCGTGCCTCCAAGGATGGAGGCGATGATGGCGGCAATGCCGCCTGCTT 63140 |||||||||| || |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 2471 GCTCCAGAGCAACAGTGCCTCCGAGAATGGAGGCGATGATGGCGGCAATGCCGCCTGCTT 2412 Query 63141 TCTTGGGAGTCATCGCCATGGCTACCTCACTTACTGAACCAGCCGAAGATGGTGTCCTTG 63200 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2411 TCTTGGGAGTCATTGCCATGGCTACCTCACTTACTGAACCAGCCGAAGATGGTGTCCTTG 2352 Query 63201 AAGAATACGGCGACGGAGAGCACGGCCACCACGCCAGACCAGATATAAGTGCCGGCCCGG 63260 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351 AAGAACACGGCGACGGAGAGCACGGCCACCACGCCAGACCAGATATAAGTGCCGGCCCGG 2292 Query 63261 CCAGCACCCACAATCTTGTGCTTGACCTCGATGTAGTCGTTGAGGGTAGGCTGTGCCTTG 63320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2291 CCAGCACCCACAATCTTGTGCTTGACCTCGATGTAGTCGTTGAGGGTAGGCTGTGCCTTG 2232 Query 63321 GCCAGGGCGGCATCCAGATTGTCCAGCCGACCTTCCATCTTCGTCACCGCGGTCTTCGTG 63380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 GCCAGGGCGGCATCCAGATTGTCCAGCCGACCTTCCATCTTCGTCACCGCGGTCTTCGTG 2172 Query 63381 TCACCTGCCGACTGCTGAATTTCACGGACCATGGTGAAAAGGGTCTTCATGTTCTCTTCG 63440 ||||||||||| ||||| || || || |||| ||||||||||||||||||||||||||| Sbjct 2171 TCACCTGCCGATTGCTGGATCTCTCGAACCAGAGTGAAAAGGGTCTTCATGTTCTCTTCG 2112 Query 63441 TAGCGGGCCTCCAGCACCGCCATCTGTCGAGCAATATCGGGATGATCACTCATTACGAGC 63500 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 2111 TAGCGGGCCTCCAGCACCGCCATTTGTCGAGCAATATCGGGATGGTCACTCATTACGAGC 2052 Query 63501 TCCTATGAAAAAGGGGCCAATGGCCCCTGGGTTGAGGT-TTAGCAGCCGCAGTCTCGCAG 63559 |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| Sbjct 2051 TCCTATGAAAAAGGGGCCAATGGCCCCTGG-TTGAGGAATTAGCAGCCGCAATCTCGCAG 1993 Query 63560 ACGCTGCATGACGATATTATCCCGCATCACCTGCGTATAGCTCCAAAGGTACTTGTACGG 63619 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1992 ACGCTGCATGACGATATTATCCCGCATCACCTGTGTGTAGCTCCAAAGGTACTTGTACGG 1933 Query 63620 GATCTGCGCTTCAATGGCCAAGCCCAGAGCCTGGTCACAAGTTCGCCAGATATAAGCATC 63679 ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 1932 GATCTGCGCCTCAATGGCCAAGCCCAGGGCCTGGTCACAGGTCCGCCAGATATAGGCATC 1873 Query 63680 CTC 63682 ||| Sbjct 1872 CTC 1870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236640445695005