Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq764 1472 0.0 >seq764 Length=2831 Score = 1472 bits (1632), Expect = 0.0 Identities = 906/963 (94%), Gaps = 2/963 (0%) Strand=Plus/Minus Query 62449 TCTTCTCTAGTCCAACATAGCTCGCTATTGTGCCAGGTCCGATGTTGCCGTCCACGACTA 62508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2831 TCTTCTCTAGTCCAACATAGCTCGCTATTGTGCCAGGTCCGATGTTGCCGTCCACGACCA 2772 Query 62509 CCTTCGGGAAATCCTTGCCGTCCCGGCTCACGGCATTCAGCCCACGCTGGAACCAGAGGG 62568 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2771 CCTTCGGGAAATCCTTGCCGTCACGGCTCACGGCATTCAGCCCACGCTGGAACCAGAGGG 2712 Query 62569 ACATTTGCCGTGTGCCTACGTTTACGCCACCGTCGATCACCCGTTTGCCCAGCGCAGGAC 62628 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| | Sbjct 2711 ACATTTGCCGTGTGCCCACGTTCACGCCTCCGTCGATCACCCGTTTGCCCAGGGCAGGGC 2652 Query 62629 TGCGGGCCACGATCTCGGTGAAGCCCGGCTTGTGCACGTAGCTCTCGGCGTAGATATCCA 62688 | ||||||||||| || ||| || || || ||||||||||||||||||||||||| Sbjct 2651 TACGGGCCACGATGCCGTCGAACCCAGGGGCGTAGACGTAGCTCTCGGCGTAGATATCCA 2592 Query 62689 GGGCAGTCTCCACCGGCAGGTCTCGCATGTCGCCGGTGTAGTCGTGGGCCCGAGCCACCT 62748 | || ||||||||||| |||||| ||||||||||||||| |||||||| || ||||||| Sbjct 2591 GAGCGGTCTCCACCGGGAGGTCTTTCATGTCGCCGGTGTAATCGTGGGCACGGGCCACCT 2532 Query 62749 TCTCGGTGATGCCGTGATTGGTGGCACCGCCAGGATCTTTCGGGTTGTTGGAGTAGCCCT 62808 |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||| Sbjct 2531 TCTCGGTGATGCCGTGGTTGGTAGCACCGCCAGGATCCTTGGGGTTGTTGGAGTAGCCCT 2472 Query 62809 GCTCCAGAGCCACCGTGCCTCCAAGGATGGAGGCGATGATGGCGGCAATGCCGCCTGCTT 62868 |||||||||| || |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 2471 GCTCCAGAGCAACAGTGCCTCCGAGAATGGAGGCGATGATGGCGGCAATGCCGCCTGCTT 2412 Query 62869 TCTTGGGAGTCATCGCCATGGCTACCTCACTTACTGAACCAGCCGAAGATGGTGTCCTTG 62928 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2411 TCTTGGGAGTCATTGCCATGGCTACCTCACTTACTGAACCAGCCGAAGATGGTGTCCTTG 2352 Query 62929 AAGAATACGGCGACGGAGAGCACGGCCACCACGCCAGACCAGATATAAGTGCCGGCCCGG 62988 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351 AAGAACACGGCGACGGAGAGCACGGCCACCACGCCAGACCAGATATAAGTGCCGGCCCGG 2292 Query 62989 CCAGCACCCACAATCTTGTGCTTGACCTCGATGTAGTCGTTGAGGGTAGGCTGTGCCTTG 63048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2291 CCAGCACCCACAATCTTGTGCTTGACCTCGATGTAGTCGTTGAGGGTAGGCTGTGCCTTG 2232 Query 63049 GCCAGGGCGGCATCCAGATTGTCCAGCCGACCTTCCATCTTCGTCACCGCGGTCTTCGTG 63108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 GCCAGGGCGGCATCCAGATTGTCCAGCCGACCTTCCATCTTCGTCACCGCGGTCTTCGTG 2172 Query 63109 TCACCTGCCGACTGCTGAATTTCACGGACCATGGTGAAAAGGGTCTTCATGTTCTCTTCG 63168 ||||||||||| ||||| || || || |||| ||||||||||||||||||||||||||| Sbjct 2171 TCACCTGCCGATTGCTGGATCTCTCGAACCAGAGTGAAAAGGGTCTTCATGTTCTCTTCG 2112 Query 63169 TAGCGGGCCTCCAGCACCGCCATCTGTCGAGCAATATCGGGATGATCACTCATTACGAGC 63228 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 2111 TAGCGGGCCTCCAGCACCGCCATTTGTCGAGCAATATCGGGATGGTCACTCATTACGAGC 2052 Query 63229 TCCTATGAAAAAGGGGCCAATGGCCCCTGGGTTGAGGT-TTAGCAGCCGCAGTCTCGCAG 63287 |||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| Sbjct 2051 TCCTATGAAAAAGGGGCCAATGGCCCCTGG-TTGAGGAATTAGCAGCCGCAATCTCGCAG 1993 Query 63288 ACGCTGCATGACGATATTATCCCGCATCACCTGCGTATAGCTCCAAAGGTACTTGTACGG 63347 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1992 ACGCTGCATGACGATATTATCCCGCATCACCTGTGTGTAGCTCCAAAGGTACTTGTACGG 1933 Query 63348 GATCTGCGCTTCAATGGCCAAGCCCAGAGCCTGGTCACAAGTTCGCCAGATATAAGCATC 63407 ||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 1932 GATCTGCGCCTCAATGGCCAAGCCCAGGGCCTGGTCACAGGTCCGCCAGATATAGGCATC 1873 Query 63408 CTC 63410 ||| Sbjct 1872 CTC 1870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236294849717465