Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027350.1 Length=49816 Score E Sequences producing significant alignments: (Bits) Value seq473 134 4e-27 >seq473 Length=26706 Score = 134 bits (148), Expect = 4e-27 Identities = 375/564 (66%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 37011 TCCGGCATTACAAAGCCGTTACCCGTCCAAAGACAAGtttttttGGTGTACGCATCGCGA 37070 |||||||| || ||| ||| | ||||| |||||||| || || | ||| |||||||| Sbjct 26702 TCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGC 26643 Query 37071 G-CGGGAATGATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCTCCAA 37128 | || || | || |||| | ||||| |||| || || | | || || ||| Sbjct 26642 GGCGCGATATACATCGGGAACCAG-GGATGCGCGTCATTCTCAGGAAGATAG-CCGCCAT 26585 Query 37129 ACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACACTAACAG 37188 || | || |||| ||| || |||| | ||| || ||||| || || || | Sbjct 26584 ACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACCG 26525 Query 37189 GATTCTCAATCATATATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCCG 37248 |||||||||| || || | ||| | | ||| |||| || || ||||| || | Sbjct 26524 GATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCAG 26465 Query 37249 TTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCGGCAAAGTGACGCG 37308 | | || || || | |||||| ||||||||||||||||| |||||| || || | Sbjct 26464 TAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCGAG 26405 Query 37309 ATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAGTGCCAA 37368 || |||||||| | |||||||||||| |||| || ||||||||||| || || || Sbjct 26404 CACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTCAT 26345 Query 37369 AGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAATAAACG 37427 | || | | || | | | | | ||| | | || | || | | |||| ||| | Sbjct 26344 ACACACCCGCGATCGTATCACGTTCGAACTTCTCAT-CAATGAAGACGTTCACATACTCA 26286 Query 37428 ATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCACCGTCG 37481 ||||| ||||| || | || || ||| |||||| || ||||| || ||||| Sbjct 26285 ATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTCA 26226 Query 37482 AAATTAAAGCACAGCACTTTGTGACCACGTT----CAGCCCACGGCAACGCAGCATAACC 37537 || || ||||||| ||| || ||||| | | ||| || ||| ||||| ||| Sbjct 26225 AAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGC----CAGCAAGACC 26170 Query 37538 AGAACCATCAAATAGTGAGAAAAT 37561 ||||| || |||||||| |||| Sbjct 26169 GGAACCGTCGAATAGTGACCAAAT 26146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159287793556380