Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq473 98.7 3e-16 >seq473 Length=26706 Score = 98.7 bits (108), Expect = 3e-16 Identities = 242/357 (68%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 2917 CCGGATATCATCTATG-CATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGC--GCCA 2973 |||||| | || |||| | |||| || || || || || || || ||||| || |||| Sbjct 26353 CCGGATTTTAT-TATGGCCTTCCATCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCA 26411 Query 2974 GCTTTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGC-ACCGC 3032 || || || || || | || || || |||||| || || || ||| || || Sbjct 26412 TTTTGCCAGC--AAGCGTGAACGTGATCCGCTATTCCAGGAGAAAGCTGT-CGCTACTGC 26468 Query 3033 GAAGATTGCAGCTTACCTGGGTGATTTCTTCGAAGTGCCATATATGATTGAGAATCCGCG 3092 ||||| || || | || ||| | | | ||| | || || |||||||||||| Sbjct 26469 CCGTATTGCCGCGAACATTGGCGATAGCATGGGCGTGACTTACATAATTGAGAATCCGGT 26528 Query 3093 CAGCGTGCTTTCTACCCAATGGCGTAAGCCAGACCACTCGTTTGACCCGTGGGAGTATGG 3152 ||||| || || | |||| | || ||| | ||||| || | || ||||||||||| Sbjct 26529 GAGCGTCCTGTCATCTGCATGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTATGG 26588 Query 3153 CGGCTATTTGCCGGAGGATGACGTGCACCCGCTCTTCCCGGAATACATCAACGCC-CGCG 3211 ||||||| | || ||| |||||| ||| || |||||| || ||| |||| |||| Sbjct 26589 CGGCTATCTTCCTGAGAATGACGCGCATCCCTGGTTCCCGATGTATATC-GCGCCGCGCG 26647 Query 3212 ATTCATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 3268 || | || |||||| ||| || | |||||| ||| |||| |||||| |||| Sbjct 26648 ATGCTTACCCGAAGAAGACTTGTCTGTGGACCTCTGACGACTTCGTTATGCCGGAGA 26704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142638382373250