Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq297 309 2e-79 seq129 102 6e-17 seq117 100 2e-16 seq166 96.9 3e-15 >seq297 Length=62275575 Score = 309 bits (342), Expect = 2e-79 Identities = 629/924 (68%), Gaps = 24/924 (3%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| | || || || ||||| || |||| ||||| || ||| Sbjct 25391967 TTACTGAGAGAAAATCCCCGCCGTTTCGTTGTCTTTCCCATCGAATACCATGATATCTGG 25392026 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| || |||||||| || || || || || | | || Sbjct 25392027 CAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGACCTTTCCAAG 25392086 Query 43796 GACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT 43853 || | ||||| ||| || | |||||| | || | ||||||||||||| ||| Sbjct 25392087 GATATTCAGCAC--TGGGAAGCTCTGAAACCAGATGAGAGACATTTTATATCTCATGTTC 25392144 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || ||||| ||||| || || ||||||||||| || ||||| || ||| | Sbjct 25392145 TGGCCTTCTTTGCGGCGAGTGATGGCATAGTCAATGAGAACTTGGTGGAGCGATTTAGCC 25392204 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| | |||| || || ||||| ||||| || ||||||||||| || || | Sbjct 25392205 AAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAACA 25392264 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA-AG 44032 | || || |||||||||||||| || || || || ||||| |||||| | || | || Sbjct 25392265 TACACTCCGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATTCCAAAGAAAGAG 25392324 Query 44033 CATCGAT-TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 || || | || || || || || ||| | ||| | || | || || |||||||| Sbjct 25392325 AAT--ATCTCTTCAACGCCATTGAGACAATGCCTTGTGTGAAGAAGAAGGCTGACTGGGC 25392382 Query 44092 CCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 | | ||||| | | | | | | | |||||||||| |||| || || || | Sbjct 25392383 CTTGCGTTGGATTGGGGACAAAGAGGCTACGTATGGAGAACGAGTTGTGGCCTTCGCTGC 25392442 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 || ||||| || |||||||| || || ||||| | ||||| ||| | |||||||| || Sbjct 25392443 GGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAAACGGGG 25392502 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 ||||||| || | || ||||| ||||| | || || | ||||| || | || || Sbjct 25392503 ACTGATGCCGGGCCTTACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTCTGCACTG 25392562 Query 44269 CGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAAT 44328 || ||||| ||| || | | | || | | || ||||| || ||| | | Sbjct 25392563 TGACTTTGCCTGCCTGATGTTCAAGCACCTGGTACAC---AAGCCCTCGGAGCAGAGAGT 25392619 Query 44329 TACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACC 44388 | ||| || || | || || | |||||| || || || | ||| || | || Sbjct 25392620 AAAAGAAATAATTACCAACGCGGTCAGGATAGAGCAGGAGTTCCTCACAGAGGCCCTGCC 25392679 Query 44389 TGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447 ||| || | || || ||||| || || |||||||| || || || || | | || | Sbjct 25392680 TGTGAAGCTCATCGGGATGAATTGCAC-CTTGATGAAGCAGTACATCGAGTTTGTGGCCG 25392738 Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTT 44503 | | | | |||| ||||||| | |||| || || ||| |||| || ||| Sbjct 25392739 ACAGGCTTATGCTGGAGCTGGGTT----TTAACAAGATTTTCAAAGTAGAAAATCCATTT 25392794 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 || || ||||| |||||||| | ||||| ||||||||||| ||||| || || || || Sbjct 25392795 GACTTCATGGAGAATATTTCACTAGAAGGAAAAACAAACTTCTTTGAGAAGCGAGTAGGC 25392854 Query 44564 GAATATCAGCGAATGGGCGTCATG 44587 || || ||| | ||||| || ||| Sbjct 25392855 GAGTACCAGAGGATGGGAGTAATG 25392878 >seq129 Length=145729302 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || || || | ||| ||||| |||||||| || ||||| ||||| Sbjct 76759339 GGGGAAAGAGTGGTGGCCTTCGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCATTTGCT 76759280 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||| ||||||| |||| | ||||||||| |||| ||||||||||| | Sbjct 76759279 GCTATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGGCTGACTTTTTCAAATGAACTG 76759220 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 76759219 ATCAGCAGGGATGAAG 76759204 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || |||||||| ||||| |||||||| || ||||| | Sbjct 76750201 AAAATCCCTTTGATTTTATGGAGAACATTTCGTTAGAAGGGAAAACAAATTTCTTTGAGA 76750142 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| || ||||||||| | | |||||| ||| | || ||| || | Sbjct 76750141 AACGAGTTTCTGAGTATCAGCGATTTGCAGTCATGGCAGAAACCACAGATAATGTCTTCA 76750082 Query 44610 CTACGGATGAAGATTTCTAA 44629 | ||||| |||||||||| Sbjct 76750081 CCTTGGATGCAGATTTCTAA 76750062 >seq117 Length=147991367 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| || || Sbjct 43886662 CAAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAAC 43886721 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || || || |||||||||||||| || || || || ||||| |||||| Sbjct 43886722 ATACACTCCGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 43886769 >seq166 Length=122095297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | ||||| ||||| || ||||| || |||| Sbjct 121921686 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTTTATGTGGTGAATGGGGAGCTGT 121921627 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || | ||||| || ||||| || || || || || ||||| || | Sbjct 121921626 CTTGCCAGCTTTACCAGCGGTCAGGAGATATGGGTCTGGGTGTGCCCTTCAACATTGCCA 121921567 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACA 41197 | ||||||||||| || || ||||||||||| Sbjct 121921566 GCTATGCTCTGCTGACCTACATGATTGCACA 121921536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451373984775