Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq174 95.1 1e-14 seq97 95.1 1e-14 seq219 86.0 5e-12 seq232 82.4 6e-11 >seq174 Length=112626471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| | ||||| ||||| || ||| Sbjct 48881482 GTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 48881423 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 48881422 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 48881363 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || ||||| || || | ||||| ||||| || Sbjct 48881362 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTC 48881303 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 48881302 TTCACGAAGATCTGCAT 48881286 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | | |||| | ||||| ||||| || ||| Sbjct 48881710 GTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 48881651 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 48881650 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 48881591 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 48881590 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 48881531 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 48881530 TTCACGAAGATCTGCAT 48881514 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | | |||| | ||||| ||||| || ||| Sbjct 49699226 GTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 49699285 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 49699286 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 49699345 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 49699346 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 49699405 Query 27231 TTCACAAAGATTTGCAT 27247 |||||| ||| |||||| Sbjct 49699406 TTCACAGAGAATTGCAT 49699422 >seq97 Length=173707219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | | |||| | ||||| ||||| || ||| Sbjct 138042926 GTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 138042867 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 138042866 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 138042807 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 138042806 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 138042747 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 138042746 TTCACGAAGATTTGCAT 138042730 >seq219 Length=114033958 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || | ||| || || |||||||| | | |||| | ||||| ||||| || ||| Sbjct 14315736 GTTGACTTTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 14315795 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||| ||||| ||||||| ||| Sbjct 14315796 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 14315855 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | | | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 14315856 ACGTTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 14315915 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 14315916 TTCACGAAGATTTGCAT 14315932 >seq232 Length=115493446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| | ||||| ||||| || ||||| ||||||| | ||| || || || || | | Sbjct 36865972 TGCGGCCATCTTCCAGCTGCTTGCCGGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGC 36865913 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 ||| ||||| ||||||| |||| | || | ||||| ||| || || |||| Sbjct 36865912 TCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCTA 36865853 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| ||||| || ||||| ||||||||||| Sbjct 36865852 GGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 36865810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929454161960