Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 >seq1 Length=282763074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||||||| || ||||| || | |||| | ||| || || || Sbjct 167553516 CTCATCTTTACTGGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 167553457 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| |||||| ||| || | || |||||||||||||| || || || Sbjct 167553456 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCC 167553397 Query 111385 CGTCTCCGTCTGTGA 111399 |||||||||||| || Sbjct 167553396 CGTCTCCGTCTGAGA 167553382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024502868000