Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 6e-13 seq129 82.4 9e-11 >seq1 Length=282763074 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||| ||| |||||||||| || || ||||||| ||| | ||| ||||| || Sbjct 167553516 CTCATCTTTACTGGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 167553457 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 || ||||| || || ||| |||||| | || ||||| ||||||||||| || || Sbjct 167553456 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCC 167553397 Query 118859 CGTCTCCGTTTGGGACT 118875 ||||||||| || |||| Sbjct 167553396 CGTCTCCGTCTGAGACT 167553380 >seq129 Length=145729302 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 130048 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 130107 ||| |||||||| || || ||| || |||||||| || | |||||| | |||||| || Sbjct 76759217 GATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATAT 76759276 Query 130108 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 ||| |||||| ||||||||||| ||||| || ||| ||||| || Sbjct 76759277 AGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427817429800