Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq166 116 3e-21 >seq166 Length=122095297 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||| |||||||||||||| || || ||| || || |||||||| || |||||| Sbjct 121921527 CCCGTGATATGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGGCACA 121921586 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||||||||| || | || || ||||| || || || | | |||| Sbjct 121921587 CCCAGACCCATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACA 121921646 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||||||||| || |||| |||||||||| ||||||| Sbjct 121921647 TAAAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 121921685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391941038120665