Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 seq129 82.4 8e-11 >seq1 Length=282763074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| || |||||||||| || | ||||| ||||||||||||| | Sbjct 167553491 ATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCGG 167553432 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||||||| ||| |||||| |||||| || || || ||||| Sbjct 167553431 TTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 167553391 >seq129 Length=145729302 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| || ||||||||||| || || |||||| |||||||| || ||| | ||| Sbjct 76759312 GTAGAAGGGATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGCTAAAGAAGAGAGGC 76759253 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 |||||||| || |||| ||| || || || ||||| Sbjct 76759252 CTCATGCCTGGGCTGACTTTTTCAAATGAACTGAT 76759218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518251985200