Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq297 84.2 2e-11 seq174 82.4 8e-11 >seq297 Length=62275575 Score = 84.2 bits (92), Expect = 2e-11 Identities = 291/445 (65%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| ||||| ||||| || || ||||| | || || |||||||| Sbjct 25392859 TACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTCCATG 25392800 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCGA 74582 |||| || || || | | | | |||| || || | || ||| || | Sbjct 25392799 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAGCCTG 25392740 Query 74583 TCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCAC 74642 || |||||||| | ||||||||| |||| || ||| |||||||| || ||| Sbjct 25392739 TCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTT-CAC 25392681 Query 74643 -GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG-- 74699 ||||| ||||| |||| ||||| ||| | | | | | | |||| | | || Sbjct 25392680 AGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTG--ACCGCGTTGGTAATTATTTCT 25392623 Query 74700 -TGAATGTCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAAC 74756 | | | ||| | ||||| | | || ||||| | | | | | || |||||| Sbjct 25392622 TTTACTCTCTGCTCCGAGGGCTTGTGTACC--AGGTGCTTGAACATCAGGCA-GGCAAAG 25392566 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || ||| || ||||||||||| || | |||||| ||||| | |||||| ||||| Sbjct 25392565 TCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCATC 25392506 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 ||||| || ||||| | ||| || || | || |||||| |||||||| ||||| Sbjct 25392505 AGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCT 25392446 Query 74877 ACACACGCAAAGGCGACAAGGCGTT 74901 || || ||||| |||| |||| Sbjct 25392445 ACCGCAGCGAAGGCCACAACTCGTT 25392421 >seq174 Length=112626471 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| | | |||||| | ||||||||||| ||||| || |||||||| Sbjct 86914994 GTAAAGATGTACCTAGGGCTGGCTGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 86915053 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| | || ||| ||||| ||||||||||||||||| | | Sbjct 86915054 CCAATAGGCTGTAGAAGGTTCAAATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 86915113 Query 152149 ATCGT 152153 || || Sbjct 86915114 ATGGT 86915118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209467609000