Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq206 109 3e-19 seq97 89.7 3e-13 >seq206 Length=52716770 Score = 109 bits (120), Expect = 3e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || | ||| |||||| || ||||| || ||||| Sbjct 36640450 GCCCCCTCTGAGGCGAAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36640391 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36640390 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36640331 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36640330 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36640271 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || ||||| ||||| ||||||||||| |||||||| Sbjct 36640270 CTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 36640223 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || || ||| |||||| || ||||| |||||||| Sbjct 36641134 GCCCCCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGA 36641075 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36641074 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641015 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36641014 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36640955 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36640954 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36640906 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||| || || ||| |||||| || ||||| || ||||| Sbjct 36642502 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36642443 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36642442 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36642383 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36642382 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36642323 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36642322 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36642274 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || || ||| |||||| || ||||| || ||||| Sbjct 36641362 GCCCCCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36641303 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36641302 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641243 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36641242 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641183 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36641182 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641134 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 36641590 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 36641531 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36641530 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641471 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36641470 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641411 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36641410 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641362 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 36642046 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 36641987 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36641986 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641927 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36641926 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641867 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36641866 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641818 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || || ||| |||||| || ||||| || ||||| Sbjct 36642274 GCCCCCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36642215 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36642214 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36642155 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36642154 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36642095 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36642094 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36642046 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || | ||| |||||| || ||||| || ||||| Sbjct 36640678 GCCCCCTCTGAGGCGAAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36640619 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36640618 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36640559 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36640558 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36640499 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36640498 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36640450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || | ||| |||||| || ||||| || ||||| Sbjct 36640906 GCCCCCTCTGAGGCGAAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36640847 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36640846 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36640787 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36640786 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36640727 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36640726 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36640678 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || || | |||| || | ||| |||||| || ||||| || ||||| Sbjct 36641818 GCCCCCTCTGAGGCGAAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36641759 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 36641758 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641699 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||| || | | ||| ||||| | ||| || Sbjct 36641698 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641639 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || |||||||| ||||||||| Sbjct 36641638 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641590 >seq97 Length=173707219 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| | || ||| | |||||||||| ||||||||||||||| || || | Sbjct 138628756 CGCCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 138628815 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| | || ||||| ||||| || || | ||| || || || | Sbjct 138628816 ACAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAG 138628875 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | ||| ||||| || |||||| |||| | || ||||| | || | Sbjct 138628876 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 138628935 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || ||||||||||||||||| Sbjct 138628936 CCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725936842515