Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_028901.1 Length=43900 Score E Sequences producing significant alignments: (Bits) Value seq473 89.7 1e-13 >seq473 Length=26706 Score = 89.7 bits (98), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 1546 GTGCCATATATGATTGAGAATCCGCGCAGTGTGCTTTCCACCCAGTGGCGCAAGCCGGAT 1605 ||| | || || |||||||||||| || || || || | ||| | || || || Sbjct 26503 GTGACTTACATAATTGAGAATCCGGTGAGCGTCCTGTCATCTGCATGGAGAAAACCAAAT 26562 Query 1606 CACTCGTTCGACCCGTGGGAGTATGGGGGGTATCTGCCGGAGGATGACGTACACCCGCTC 1665 ||||| ||| | || ||||||||||| || ||||| || ||| |||||| || || Sbjct 26563 CACTCCTTCAATCCCTGGGAGTATGGCGGCTATCTTCCTGAGAATGACGCGCATCCCTGG 26622 Query 1666 TTCCCGGAATACATCAACGCC-CGCGATTCATATCCGAAGCTGACTTGCTTATGGACCGG 1724 |||||| || ||| |||| |||||| | || |||||| |||||| | |||||| Sbjct 26623 TTCCCGATGTATATC-GCGCCGCGCGATGCTTACCCGAAGAAGACTTGTCTGTGGACCTC 26681 Query 1725 CAACGGCTTCCGTATGCCAGAGA 1747 ||| |||| |||||| |||| Sbjct 26682 TGACGACTTCGTTATGCCGGAGA 26704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140356808248020