Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq166 149 6e-31 >seq166 Length=122095297 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 || ||| || |||||||| || |||||||| || || ||||||||||| ||||| || | Sbjct 121921532 GATATGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGGCACACCCAG 121921591 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || || || || |||||||| ||||||||||||||| | || || || Sbjct 121921592 ACCCATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAAAA 121921651 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||| ||||||| ||||| || || || |||||||| || ||||| Sbjct 121921652 TTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 121921696 Score = 149 bits (164), Expect = 6e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| ||||| || || | |||| Sbjct 121921696 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTTTATGTGGTGAAT 121921637 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| |||||||| || || || || ||||| ||||| | || ||||| ||| Sbjct 121921636 GGGGAGCTGTCTTGCCAGCTTTACCAGCGGTCAGGAGATATGGGTCTGGGTGTGCCCTTC 121921577 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || || |||||||| || |||||||| || ||| || Sbjct 121921576 AACATTGCCAGCTATGCTCTGCTGACCTACATGATTGCACATATC 121921532 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 121928295 TAGTCTGCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTCTCCTTCCTGT 121928354 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| |||||| ||||||||| ||||| | || ||||| || || Sbjct 121928355 CGGGCAGAGAATCCCAAGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAAATTCTC 121928414 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 121928415 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 121928448 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| || ||||| || | ||||| | Sbjct 121928448 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATTTGGGATGCCAATGGGTCCC 121928389 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| ||| ||| | | || |||| || ||| ||||||| || | Sbjct 121928388 GAGACTTTTTGGACAGCTTGGGATTCTCTGCCCGACAGGAAGGAGACCTGGGCCCAGTTT 121928329 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 121928328 ATGGATTCCAGTGGAGACATTTTGGAGCAGACTA 121928295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257048867600