Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq189 178 1e-39 seq219 118 9e-22 seq166 107 2e-18 >seq189 Length=90463843 Score = 178 bits (196), Expect = 1e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| | ||||||||||||||| ||||| || || Sbjct 60383329 ATTGTGACATGGCAGAAAAAGAAAGCCGTAGGCCCAGAAAACATGGTCACTTACAGCAAA 60383388 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | ||| |||||||| ||||||| | |||| ||| | || ||||| |||||||| ||| Sbjct 60383389 GCCCATGGGGTTGTCATTCAGCCCACCTACAGAGACAGGATAAACATCACTGAGCTGGGA 60383448 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || ||||||||||||||||| |||||||||| || ||||||| | Sbjct 60383449 CTCTTGAACACAAGCATCACCTTCTGGAACACAACCCTGGATGATGAGGGTTGCTACATG 60383508 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || |||| ||||||||||||||| | || || | || || || || || Sbjct 60383509 TGTCTCTTCAACATGTTTGGATCTGGGAAGGTCTCTGGGACAGCTTGCCTTACTCT 60383564 >seq219 Length=114033958 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 26768751 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 26768692 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 26768691 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 26768632 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 26768631 ATCGCTCTGTGGATGACTGA 26768612 >seq166 Length=122095297 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||||| |||| || | |||||||| | || || || |||||||||||| Sbjct 121921536 TGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGGCACACCCAGACCC 121921595 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || ||| |||| | |||||| | |||||||| |||||||| || | |||||||| ||| Sbjct 121921596 ATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAAAATTGA 121921655 Query 118666 CTTATGATGTGACATGGAGGCAGAACCAT 118694 | | | || || |||||||| |||| Sbjct 121921656 CAGAGGGCATGGCAAGGAGGCAGTGCCAT 121921684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414471975878620