Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq97 95.1 1e-14 >seq97 Length=173707219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | ||| | |||| || || || |||||| || || || ||||| | Sbjct 138042958 AGCCACCCCTCAGGCGGAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAG 138042899 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 || || || | || || ||||| ||||| ||||| || || | ||||||||| | || Sbjct 138042898 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 138042839 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || |||||| ||| ||| || || | || | | || || || | ||||| Sbjct 138042838 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 138042779 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | |||| ||||| | || || ||||| || || || ||||||||||| || || Sbjct 138042778 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGAC 138042724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540600491915