Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq97 107 1e-18 seq1 98.7 7e-16 seq301 95.1 8e-15 seq271 87.8 1e-12 seq206 86.0 4e-12 seq312 84.2 1e-11 >seq97 Length=173707219 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| ||||| ||||| || || Sbjct 138628984 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 138628925 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | || || ||||| Sbjct 138628924 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 138628865 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || ||||||| | || ||||| || |||||| Sbjct 138628864 CAGAGGTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTTTGTCTGACTACAAC 138628805 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 138628804 ATTCAAAAGGAGTCCAC 138628788 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||||| || || || || ||||| || || || || || Sbjct 138042727 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 138042786 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || ||||| || | || || || Sbjct 138042787 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 138042846 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | ||||| | |||||| Sbjct 138042847 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTAC 138042906 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 138042907 AACATCCAGAAAGAGTCAAC 138042926 >seq1 Length=282763074 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| ||||||||||| || || Sbjct 255573377 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCACGCTCGAAGTTGAACCCTCG 255573318 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || |||| || || ||||| Sbjct 255573317 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGAAACTCCTCCTGATCAG 255573258 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || | ||||| || || || ||||||| | || ||||| || |||||| Sbjct 255573257 CAGAGGTTGGTCTTTGCTGGTAAGCAGCTGGAAGGTGGCCGTACTTTGTCTGACTACAAC 255573198 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 255573197 ATTCAAAAGGAGTCCAC 255573181 >seq301 Length=56205956 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| | || ||||| || ||||| || ||||| ||||| ||||| || || Sbjct 23716377 ATGCAGATTTTTGAGAAGACCCTTACAGGAAAGACTATCACGCTCGAGGTTGAACCCTCG 23716436 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || || ||||| | || || |||| Sbjct 23716437 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCTG 23716496 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || || ||||| ||||| | || ||||| || | |||| Sbjct 23716497 CAGAGGTTGATCTTGGCTGGTAAGCAACTAGAAGATGGCCGTACTTTGTCTGACTGCAAC 23716556 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| |||||||| Sbjct 23716557 AT-CAAAAGGAGTCCAC 23716572 >seq271 Length=90843779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| ||||| || || ||||| ||||| | ||| || || Sbjct 33024040 ATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGGTGAACCCTCG 33023981 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| ||| || | || | || ||| | || ||||| || || | | | Sbjct 33023980 GACACTACAGAACATGTAAAGGCCAAGAATCCAGAATAAGGAAGGAACTCCTCCTGGTGA 33023921 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || | ||||| || || || ||||||||| || ||||| || ||||| Sbjct 33023920 GCAGAGGTTGGTCTTTGCTGGTAAGCAGCTGGAAGACAGCCGTACTTTGTCTGACTACAA 33023861 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||| ||| Sbjct 33023860 CATTCAAAAAGAGTGCAC 33023843 >seq206 Length=52716770 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || || || ||| Sbjct 36640907 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36640966 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||| || ||||| || || | || || || || Sbjct 36640967 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641026 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | ||||| | ||||||||| Sbjct 36641027 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTACAAC 36641086 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 36641087 ATCCAGAAGGAGTCCAC 36641103 >seq312 Length=159970021 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || |||| ||||| | ||| || | Sbjct 72456839 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCCTCACGCTCGAGGCTGAACCCTCA 72456780 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| |||| || || || | ||||| | || || ||| | Sbjct 72456779 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGGAATTCCTCCTGATGAG 72456720 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || | || |||||||| | || ||||| || |||||| Sbjct 72456719 CAGAGGTTGATCTTTGCTGGTGAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 72456660 Query 23791 ATACAAAAAGAGTCCA 23806 || ||||| ||||||| Sbjct 72456659 ATTCAAAAGGAGTCCA 72456644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005665885140