Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq97 145 2e-29 seq55 132 1e-25 seq286 131 4e-25 seq301 129 1e-24 seq1 129 1e-24 seq312 127 5e-24 seq232 118 3e-21 seq174 118 3e-21 seq258 109 1e-18 seq243 107 5e-18 seq31 96.9 8e-15 seq925 84.2 5e-11 seq189 84.2 5e-11 >seq97 Length=173707219 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || ||||||||||| || ||||| | ||||| || | |||||| Sbjct 138628763 ACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 138628822 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| ||||| ||||| | | || || || || ||||| || Sbjct 138628823 ACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCC 138628882 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 138628883 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 138628942 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||| ||||| || || Sbjct 138628943 CGTGATGGTCTTCCCTGT 138628960 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || ||||||||||| || ||||| | ||||| || | |||||| Sbjct 159895318 ACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 159895259 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| ||||| ||||| | | || || || || ||| | || Sbjct 159895258 ACGGCCATCTTCTAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCC 159895199 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || | | Sbjct 159895198 TTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAG 159895139 Query 225672 CGTGATCGTCTTGCC 225686 |||||| ||||| || Sbjct 159895138 CGTGATGGTCTTCCC 159895124 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | || | |||||| Sbjct 138042941 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 138042882 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 138042881 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 138042822 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 138042821 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 138042762 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||||||| Sbjct 138042761 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 138042727 >seq55 Length=177699992 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||| | ||||| || || ||||||||||| || ||||| | ||||| || | ||| | Sbjct 38853840 ACGACGACTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCTGACAA--T 38853897 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| ||||||| ||||| ||||| | | ||| || || || ||||| || Sbjct 38853898 ACGGCCATCTTCTGGCTGCTTACCAGCAAAGATCAACCTTTGCTGATCAGGAGGAATTCC 38853957 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| |||| || ||||| |||| ||| || || | Sbjct 38853958 TTCCTTATCCTGGATCTTGGCCTTTACATCTTCTATAGTGTCCGAGGGTTCAACCTCGAG 38854017 Query 225672 CGTGATCGTCTTGCC 225686 | |||| ||||| || Sbjct 38854018 CATGATGGTCTTCCC 38854032 >seq286 Length=88201929 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || ||||||||||| || ||||| || ||||| || | |||||| Sbjct 25394594 ACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAACGTTGTAGTCAGACAAAGT 25394653 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| |||| |||||||| |||||||| | | | ||| || || || ||| | || Sbjct 25394654 ACGGCCACCTTCCAGCTGCTTACCAGCGAATGTCAACCTTTGCTGATCAGGAGGAGTTCC 25394713 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 25394714 TTCCTCATCCTGGATCTGGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 25394773 Query 225672 CGTGATCGTCTTGCC 225686 | |||| ||||| || Sbjct 25394774 CATGATGGTCTTCCC 25394788 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||| ||||||| |||| ||||| |||| || |||| | ||||| || | |||||| Sbjct 36932183 ACGACGTCTCAGCACAAAATGGAGCATGGACTCCTTTTAAATGTTGTAGTCAGACAAAGT 36932124 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| ||||| |||| | | || || | || ||||| || Sbjct 36932123 ACAGCCATCTTCTAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATGAGGAGGAATTCC 36932064 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||| || ||||| |||| || || | | Sbjct 36932063 TTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGCTCAACATTGAG 36932004 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 | |||| ||||| || || | || ||| || Sbjct 36932003 CATGATGGTCTTCCCTGTAAGGGTCTTTGTG 36931973 >seq301 Length=56205956 Score = 129 bits (142), Expect = 1e-24 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || ||||||||||| || ||||| | ||| | || | |||||| Sbjct 23716597 ACGAAGTCTCAGCCGGAGATGGAGAGTGGACTCCTTTTG-ATGTTGCAGTCAGACAAAGT 23716539 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| ||||| ||||| ||||| | | || | || || ||||| || Sbjct 23716538 ACGGCCATCTTCTAGTTGCTTACCAGCCAAGATCAACCTCTGCAGATCAGGAGGAATTCC 23716479 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 23716478 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 23716419 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||| ||||| || || Sbjct 23716418 CGTGATAGTCTTTCCTGT 23716401 >seq1 Length=282763074 Score = 129 bits (142), Expect = 1e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||||| || || ||||||||||| || ||||| | ||||| || | |||||| | Sbjct 255573158 GAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 255573217 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 ||| |||| |||||||| ||||| |||| | | || || || || ||| | ||| Sbjct 255573218 GGCCACCTTCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAGTTTCTT 255573277 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | || Sbjct 255573278 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACTTCGAGCG 255573337 Query 225674 TGATCGTCTTGCCCGT 225689 |||| ||||| || || Sbjct 255573338 TGATGGTCTTCCCTGT 255573353 >seq312 Length=159970021 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || ||||| |||| || ||||| | ||||| || | |||||| Sbjct 37026626 ACGAAGTCTCAGCACGAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 37026567 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| ||||| |||| | | || || || || ||||| || Sbjct 37026566 ACGGCCATCTTCTAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAATTCC 37026507 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 37026506 TTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAG 37026447 Query 225672 CGTGATCGTC 225681 | |||| ||| Sbjct 37026446 CATGATGGTC 37026437 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || || ||||| |||| || ||||| | ||||| || | |||||| Sbjct 72456618 ACGAAGTCTCAGCACCAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 72456677 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||||||| ||||| ||||| | | || | || || ||||| || Sbjct 72456678 ACGGCCATCTTCCAGCTGCTCACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCC 72456737 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| ||| || |||||||||| ||| | || | Sbjct 72456738 TTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCGAG 72456797 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 72456798 CGTGAGGGTCTTCCCTGT 72456815 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | || |||||| Sbjct 54028835 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGTGGCCATCT 54028894 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || ||| |||| || || || Sbjct 54028895 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA-TACCCTCTTTATCC 54028953 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||| ||||||||||| || ||||| || | ||||| || Sbjct 54028954 TGGATCTTGGCATTCATGTTCTCGATGGTGTCATTGGGCTCCACCTCCAGGGTGATGATC 54029013 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 |||| |||| || || | ||| Sbjct 54029014 TTGCTGGTCAGGGTCTTCAAGAA 54029036 >seq232 Length=115493446 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || | |||| ||||||| | | || | |||||| Sbjct 36866021 AGGACCAGGTGCAGGGTTGACTCCTCCTGGATGCTGTAATCAGAGAGGGTGCGGCCATCT 36865962 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || || | || ||||| || || || | ||||| || Sbjct 36865961 TCCAGCTGCTTGCCGGCAAAAATGAGCCTCTGCTGGTCAGGGGGGATGCTCTCCTTATCC 36865902 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| |||| ||||| ||| Sbjct 36865901 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 36865842 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||||||| Sbjct 36865841 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 36865807 >seq174 Length=112626471 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | || | |||||| Sbjct 49699211 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 49699270 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 49699271 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 49699330 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 49699331 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 49699390 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | | | ||||||||| Sbjct 49699391 TTGCCGGTCAGGGTCTTCACAGAGAATTGCATTTT 49699425 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | || | |||||| Sbjct 48881725 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 48881666 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 48881665 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 48881606 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 48881605 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 48881546 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 48881545 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 48881514 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| || | | || | |||||| Sbjct 48881497 AGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 48881438 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || || || || Sbjct 48881437 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 48881378 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| |||| ||||| ||| Sbjct 48881377 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTC 48881318 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 48881317 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 48881286 Score = 105 bits (116), Expect = 2e-17 Identities = 158/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| ||||| || | | || | |||||| Sbjct 48881046 AGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 48880987 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || ||| | || || | || Sbjct 48880986 TCCAGCTGCTTGCC-GCAAAGATGAGCCTCTGCTGGTCAGGGGGA-TGCCCTCTTAATCC 48880929 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC--TGAGGTTTCCACGTCTAACGTGATCG 225679 ||||||| ||||||| ||||||||||| || || |||| |||| ||||| | Sbjct 48880928 -GGATCTTG-GCTTCACGTTCTCGATGGTGTCACTGGGGGC-CCACCTCTAGGGTGATGG 48880872 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||||| || || | ||| | ||||||||| Sbjct 48880871 TCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTT 48880835 >seq258 Length=90668790 Score = 109 bits (120), Expect = 1e-18 Identities = 139/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||||| || || ||||||||||| || ||||||| ||||| || | |||||| | Sbjct 52656922 GAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 52656981 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| |||||||| ||| | |||| || | || || || || ||||| |||| Sbjct 52656982 GGCCATCTTCCAGCTGCTTACCAACAAAGA-AAACCCCTGCTGATCAGGAGGAATTCCTT 52657040 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||| || ||||| || ||| | ||| || ||||| |||| || | || | | Sbjct 52657041 CCTCATCCTGGATGTTGACCTTTCCGTTTTCTATAGTGTCCGAGGGGTCAATCTCAAGTG 52657100 Query 225674 TGATCGTCTT 225683 |||| ||||| Sbjct 52657101 TGATGGTCTT 52657110 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||||| || || ||||||||||| || ||||| | ||||| || | |||||| | Sbjct 53113514 GAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAC 53113573 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||||| |||||||| ||| | |||| || | || ||||| || ||| | |||| Sbjct 53113574 GGCCATCTTCCAGCTGCTTACCAACAAAGACCAGCCTCTGCTGGTCAGGAGGAGTTCCTT 53113633 Query 225614 CCTTGTCTTGGATCTT 225629 ||| || ||||| || Sbjct 53113634 CCTCATCCTGGATGTT 53113649 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| | || ||||| ||||| || | ||| | ||||| || ||||| Sbjct 35200686 ACGAAGTCTCAGCATGAGATGGAGCGTGGACTCCTCTTGAATGTTGTAGTC----AAAGT 35200631 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| |||| ||||| | | || || | || ||||| | Sbjct 35200630 ACGGCCATCTTCTAGCTGCTTATCAGCAAAGATCAACCTCTGCTGACCAGGGGGAATTCT 35200571 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||| || |||||||| ||| || ||| || ||||| || | ||| || || | Sbjct 35200570 TTTCTTATCCTGGATCTTGGCCTTTACGTTTTCTATAGTGTCCGAAGGTTCAACCTCGAG 35200511 Query 225672 CGTGATCGTCTTGCC 225686 | |||| ||||| || Sbjct 35200510 CATGATGGTCTTCCC 35200496 >seq243 Length=111246239 Score = 107 bits (118), Expect = 5e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||| || || || | ||||| ||||| |||| ||| || | || ||| Sbjct 82529579 CGCAGTCGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGCTGTCAGACAGAGTG 82529520 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || | || |||| ||| || || | || ||||| || || || ||| Sbjct 82529519 CGGCCATCCTCCTGCCGTTTGCCAGAGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCT 82529460 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| |||||| || ||||||||| || || || || | Sbjct 82529459 TCCTTGTCTTGGATCTTGGCCTTCACTTTCTCAATGGTGTCTCTGGGCTCGACCTCAAGA 82529400 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| ||||||||||||| Sbjct 82529399 GTGATGGTCTTGCCCGTCA 82529381 >seq31 Length=266435125 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| | ||| || || || || | ||||| | ||||| | |||||| Sbjct 11072044 AAGTCTCAACATAAGATGAAGGGTAGACTTCTTTTGAAAGTTGTAGCAAGACAAAGTATG 11072103 Query 225555 CCCATCTT-CTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||| || |||||||||| ||||| ||||| | | || || ||||| ||| | |||| Sbjct 11072104 GCCATTTTTCTAGCTGCTTACCAGCAAAGATTAACCTCTGCTGATCGGGAGGAGTTCCTT 11072163 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA-GGTTTCCACGTCTAAC 225672 |||| || |||||||| ||| ||| ||| || ||||| || |||||| | | | | Sbjct 11072164 CCTTATCCTGGATCTTGGTCTTTACATTTTCTATAGTGTCCGAGGGTTTCAAACTTGAGC 11072223 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 11072224 GTGATGGTCTTCCCCGT 11072240 >seq925 Length=3657 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || || ||||| || || || |||||||| || || |||||||| |||||||| Sbjct 2353 GAAGATCTGTCCGTCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACC 2294 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 || |||||||| | || || || || || | || |||||||||||| Sbjct 2293 AGCCTGTGTTTCTATGACTGGCAAAGCAGTCAAGGAGCCACCACCAAAA 2245 >seq189 Length=90463843 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||||||||| | || ||||||||||| | | ||| | ||||| || | ||| || | Sbjct 88702446 GAAGTCTCAGCATGAGATGGAGAGTGGACTACTGTTGAATGTTGTAGTCAGACAATGTAC 88702505 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 |||||| | |||||||| ||||| |||| | | || || | || |||| |||| Sbjct 88702506 GGCCATCTGCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATGAGGGAGAATTCCTT 88702565 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 ||| ||| |||||||| ||| ||| ||| || ||| || ||| | || ||| Sbjct 88702566 CCTCGTCCTGGATCTTGGCCTTTACATTTTCTAT--AGTCCAGGGGTTCAGCCTCAAACA 88702623 Query 225674 TGATCGTCTTGCC 225686 |||| ||||| || Sbjct 88702624 TGATGGTCTTCCC 88702636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192516608262770