Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq297 358 6e-94 seq1 114 1e-20 seq219 87.8 2e-12 seq129 86.0 5e-12 seq117 82.4 7e-11 >seq297 Length=62275575 Score = 358 bits (396), Expect = 6e-94 Identities = 606/870 (70%), Gaps = 16/870 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| ||| Sbjct 25392862 TGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTCC 25392803 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACA--AGC 4376 || || ||||| ||||| | | ||| || | || || | || |||| || | Sbjct 25392802 ATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCC---AGCTCCAGCATA 25392746 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | ||| || ||||| || || ||||| |||| | ||| || || || || | Sbjct 25392745 AGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGC 25392686 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 ||||||| || || | ||| | ||||| || ||||| | || || | || ||||| Sbjct 25392685 TTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATT 25392626 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA 4556 ||||||| | | | | || || || | ||| | || |||| | || ||||| Sbjct 25392625 TCTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAG 25392566 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||||| |||| ||| || ||||||||||| ||||| || ||||| || | || ||||| Sbjct 25392565 TCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCATC 25392506 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 | || | || || ||||| ||||| | ||||| || ||||||||||| || |||||| Sbjct 25392505 AGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCT 25392446 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTT 4735 || || || || || || | ||| || ||| ||| ||||||| |||||| Sbjct 25392445 ACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCT-CTTTGTCCCCAATCCAACG 25392387 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---A 4792 || ||||||| ||| || ||||| || || || ||||| | || ||||| || | | Sbjct 25392386 CAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATA 25392327 Query 4793 TTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 || |||| || ||| |||| ||| |||||||| || || || || |||||||| | Sbjct 25392326 TTCTCTTTCTT----TGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGG 25392271 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | ||||| || || || ||||| || || || || || || | || ||||| ||||||| Sbjct 25392270 AGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAA 25392211 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| | | ||||| || || ||||| || || ||||| || ||||| || ||||| | Sbjct 25392210 CTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGA 25392151 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | |||| ||||||||||||||| | || || || || || || |||||| | | Sbjct 25392150 AGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGAA 25392091 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 ||| || | | || || || || |||||||||| || || || ||||| ||||||| Sbjct 25392090 TATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACA 25392031 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAA 5121 | ||| |||||| | || | || |||| Sbjct 25392030 TCTGCCAGATATCATGGTATTCGATGGGAA 25392001 >seq1 Length=282763074 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || || || || ||||| || || | ||||| |||||||||||| || | || Sbjct 48565466 AGCCCTTGTGAAGACAGACATTCAGATAGCTGTTCCTTCTGGGTGCTACGGAAGAGTGGC 48565407 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| || || ||||| || || || || || ||||| ||||| Sbjct 48565406 TCCACGTTCTGGCTTGGCTGTAAAGCACTTCATAGATGTAGGAGCCGGTGTCATAGACGA 48565347 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 ||| ||||||||||| || || | ||| |||| ||||||||| || Sbjct 48565346 AGATTATAGAGGAAATGTCGGCGTCGTGCTGTTCAATTTTGGAAAA 48565301 >seq219 Length=114033958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 || || || ||||| || || | ||||| |||||||||||| || ||||||| | ||| Sbjct 73234678 AAGACAGACATTCAGATAGCTGTTCCTTCTGGGTGCTACGGAAGAGTAGCTCCACGTTCT 73234619 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||| || || ||||| | || || || || ||||| ||||| | ||||| Sbjct 73234618 GGCTTGGCTGTAAAGCACTTCCTAGATGTAGGAGCCGGTGTCATAGACCACCATTATAGC 73234559 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAA 31930 ||||| || | |||||||| ||||| ||| || Sbjct 73234558 GGAAATGTGGTCGCAGTGTTGTTCAATTTAGGAAAA 73234523 >seq129 Length=145729302 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4252 CAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAA 4311 ||||| || || || || ||||| || || |||||||| ||||| ||||||||||||| Sbjct 76750115 CAAATCGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAA 76750174 Query 4312 TATTTTCCATAAAATCAAACGGATT 4336 | || |||||||||||||| ||||| Sbjct 76750175 TGTTCTCCATAAAATCAAAGGGATT 76750199 >seq117 Length=147991367 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || |||||||| || ||||| || || || ||| Sbjct 43886768 TCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTGTATGTTCTCCATGGCA 43886709 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 43886708 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTTGGCTAAATC 43886654 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || || || ||||| || | || ||||| | || | || || Sbjct 43887777 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 43887718 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || |||||||| || || || || Sbjct 43887717 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCC 43887658 Query 4692 ACTAATCG 4699 || | ||| Sbjct 43887657 ACAACTCG 43887650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044629543015