Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq166 100 2e-16 >seq166 Length=122095297 Score = 100 bits (110), Expect = 2e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||| ||||| ||||| || || || || |||||||| Sbjct 121928285 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTC 121928344 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| || | | | ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 121928345 TCCTTCCTGTCGGGCAGAGAATCCCAAGCTGTCCAAAAAGTCTCGGGACCCATTGGCATC 121928404 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 121928405 CCAAATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 121928452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502899282605