Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_031026.1 Length=49167 Score E Sequences producing significant alignments: (Bits) Value seq473 138 4e-28 >seq473 Length=26706 Score = 138 bits (152), Expect = 4e-28 Identities = 378/565 (67%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 41210 TCCGGCATTACAAAGCCGTTACCAGTCCAAAGACAAGtttttttGGTGTACGCATCGCGA 41269 |||||||| || ||| ||| | ||||| |||||||| || || | ||| |||||||| Sbjct 26702 TCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGC 26643 Query 41270 G-CGGGAATGATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCTCCAA 41327 | || || | || |||| | ||||| |||| || || | | || || ||| Sbjct 26642 GGCGCGATATACATCGGGAACCAG-GGATGCGCGTCATTCTCAGGAAGATAG-CCGCCAT 26585 Query 41328 ACGCGCAAGGATGAAAGATAAAATCAGGTTGCCGCCACATTGACGACAGAACACTAACAG 41387 || | || |||| ||| || |||| | ||| || ||||| || || || | Sbjct 26584 ACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACCG 26525 Query 41388 GATTCTCAATCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCCG 41447 |||||||||| ||||| | ||| | | ||| |||| || || ||||| || | Sbjct 26524 GATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCAG 26465 Query 41448 TTTCAACCGCCTTTTTCTGGAAGTCTGGATCACGTTCACGCTTTGCTG-CAAAGTGACGC 41506 | | || || || | |||||| ||||||||||||||||| |||| |||| || || Sbjct 26464 TAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTT-GCTGGCAAAATGGCGA 26406 Query 41507 GATCCGCTAACAGCTAAATCAGTGCATGGAGGGAATGCAATAATAAAATCTGGAGTGCCA 41566 | || |||||||| | |||||||||||| |||| || ||||||||||| || || || Sbjct 26405 GCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTCA 26346 Query 41567 AAGACGCGCATCATTGCGTTATGCTGGAA-TGATAATCCGATCCACTCATTCAAATAAAC 41625 | || | | || | | | | | ||| | | || | || | | |||| ||| | Sbjct 26345 TACACACCCGCGATCGTATCACGTTCGAACTTCTCAT-CAATGAAGACGTTCACATACTC 26287 Query 41626 TATGTTGGGATGAGTCACGC--GCACTG---ATTG-GTAATCACCATGATCAGCACCGTC 41679 ||||| ||||| || | || || ||| |||||| || ||||| || ||||| Sbjct 26286 AATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 26227 Query 41680 GAAATTAAAGCACAGCACTTTGTGACCACGTT----CAGCCCACGGCAACGCAGCATAAC 41735 || || ||||||| ||| || ||||| | | ||| || ||| ||||| || Sbjct 26226 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGC----CAGCAAGAC 26171 Query 41736 CAGAACCATCAAATAGTGAGAAAAT 41760 | ||||| || |||||||| |||| Sbjct 26170 CGGAACCGTCGAATAGTGACCAAAT 26146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157211017108590