Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq232 609 3e-169 seq297 444 8e-120 seq1 114 2e-20 seq117 111 2e-19 >seq232 Length=115493446 Score = 609 bits (674), Expect = 3e-169 Identities = 1516/2287 (66%), Gaps = 51/2287 (2%) Strand=Plus/Minus Query 76767 TTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTAC 76826 || ||||| | || || || || |||||| | |||||| |||| | || ||| ||| Sbjct 76911780 TTTTTCTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATAC 76911721 Query 76827 ATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAA 76886 || | ||| |||| |||| | |||| || || || ||||| || || |||||| || Sbjct 76911720 ATCCGAGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAG 76911661 Query 76887 CTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCA 76946 | || || || ||||| || || | ||||| ||||||| || |||| | ||||| ||| Sbjct 76911660 TTGGGCTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCA 76911601 Query 76947 GCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTG 77006 || ||||| || | || ||||| |||| |||||||| || || || | | ||| || Sbjct 76911600 GCTGCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTC 76911541 Query 77007 ATATCATCTGGAAGGTTTG-TAT--TTTGAATGGAACCACCATCTGATATAATTGTATTC 77063 | | ||| |||| | || || | |||||||| ||| | | || ||| Sbjct 76911540 AGGTTATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTT 76911481 Query 77064 TTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 || || || ||||||||||| | ||| || | | || | || | ||||||| || Sbjct 76911480 TTCATCTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACA 76911421 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 || ||||||||||| ||||| ||||| | |||||| || ||||||| || | || | Sbjct 76911420 ATCTGAAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATG 76911361 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 || | ||| || | || ||| |||||||| ||||||| ||||| || || | | |||| Sbjct 76911360 GACTGATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAA 76911301 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 || ||||| | ||| | || || || | || ||| ||||| ||||| || ||| Sbjct 76911300 CTGTTTCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCT 76911241 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | ||| | ||||| ||| | ||| || || ||||| || || || | ||||| | | Sbjct 76911240 GTAGGAATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCA 76911181 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAA 77423 || |||| | || || | | | ||||| ||||| || ||||||| ||||| ||| Sbjct 76911180 TACGTTTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAA 76911121 Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||| ||||| || || | |||||| | || ||||| || || Sbjct 76911120 TAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTC---------- 76911071 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 || || || |||||||||| || || || ||||| ||||| || | ||| Sbjct 76911070 ------AGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGT 76911017 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 ||||| || | | || ||||||||||| || || || || || || |||||||| || Sbjct 76911016 TTATTTGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGA 76910957 Query 77604 TTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCT---TCCATCT 77660 ||| |||| |||||| || || ||||| ||| ||| | | | | | Sbjct 76910956 TTTTGGACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGT 76910897 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 | || ||||||| | ||| | ||| || | ||||||| ||| ||||||| | || Sbjct 76910896 GTGACCTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTG 76910837 Query 77721 --GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTT 77778 ||| | |||||| ||||| || | || |||||||| || ||||| || |||| Sbjct 76910836 GTGCAACT----CTATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTT 76910781 Query 77779 GGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCT 77838 || ||||||| | || |||| || || || || | || || || || || || Sbjct 76910780 GGCTGCTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCT 76910721 Query 77839 GTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTT--GTATCGCC 77895 | || | || || | | ||| | | || | ||||| || | ||| | || | Sbjct 76910720 GAGACCCAATGATGGCGTACCAAAGCTGCT-GAACTTTTCACA-ACTTTTCAGACACGAC 76910663 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 || | || || ||||| | || || || |||||| |||| || |||| | Sbjct 76910662 CCTGCTTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGAC 76910603 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 |||| || ||||| || ||||||| ||||| ||| | || ||||| ||||| | Sbjct 76910602 CAGGACACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGA 76910543 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 |||||| || |||| || || | || ||||| | | | |||||||| || |||| Sbjct 76910542 AGAGATTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTG 76910483 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATC-AG------AATGCCATGGTTCTAGA 78128 | ||||| || | || || ||||| | || || || ||||| || | || Sbjct 76910482 TGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGG 76910423 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | | || || || || || || || ||||| | || | || ||||| Sbjct 76910422 TAAATAGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTG 76910364 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 |||| ||||||| | ||| | || || ||||| | | || || |||| ||| || Sbjct 76910363 TTATGTACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAG 76910304 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 || ||| | || |||||| | | | | | | | ||||| || || |||||| || Sbjct 76910303 CTACCAATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTAGAAATC 76910245 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 | | | | |||| ||||| || || ||||| || |||||| | |||| | | Sbjct 76910244 AAGGAATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTCAAG 76910185 Query 78369 AGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 || ||||||| ||||| || || | || || ||||| || | ||||||| || Sbjct 76910184 AGGAAACAGCGAGACAGCTG-TGGGCAGTGGTCCCAGCATTGAAGAGAATCGGAGAGGCT 76910126 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || ||||| || || |||||||||||||||||||||||||| || | || || || | Sbjct 76910125 TGAGTAAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCTTCT 76910066 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | ||||| || || | ||| | ||||||||||||||| |||| |||| || || | Sbjct 76910065 TTGTGAATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTTCCA 76910006 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 | || |||||||| ||||| ||||| || ||||||||||| |||||||| || Sbjct 76910005 CTGATCTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACGAAA 76909946 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTG--GTAACAATATCCA 78666 | | || || ||||| ||||||| || | ||||| |||| | ||||||| || | Sbjct 76909945 TTCCAGTCATAGATAATGGCAGAATTCAGGTGATCTT--TATTAGCCATAACAATGTCAA 76909888 Query 78667 TGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATA 78726 | | | | | | || ||||| | | || | ||||| | ||||| | | Sbjct 76909887 GTGCTGAACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTAGA 76909828 Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786 ||| ||||| |||| | || | ||| |||||||| ||||| | ||||| ||||| | Sbjct 76909827 GATCCTCCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGA 76909768 Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATG--TTGTGTAGTA--CAAGTGGCTGCTATT 78842 | ||||| || || || ||||| ||||| || | | | ||| || ||||| ||| | Sbjct 76909767 TCCTTGCTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTGTC 76909708 Query 78843 TCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACT 78902 || || || | | || | || | || ||||||||| | | ||| ||||| | ||| Sbjct 76909707 TCAGCAGCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTACT 76909648 Query 78903 TTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTA 78962 ||||||| ||| | ||||| | ||||| || | || | |||||||| | ||| Sbjct 76909647 TTCATGGTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCTGG 76909588 Query 78963 ATACGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCATTTCGTTTAATAACG 79022 || || ||||| ||||| ||||| ||||| ||| | || |||| | | || || || Sbjct 76909587 ATTCGTGATGTAATTTTGTCAAACATAACTCGCTCTTGGCGGCCATCTTGCTTGATCACA 76909528 Query 79023 AACATCG 79029 ||||| Sbjct 76909527 CGCATCG 76909521 >seq297 Length=62275575 Score = 444 bits (492), Expect = 8e-120 Identities = 662/933 (71%), Gaps = 11/933 (1%) Strand=Plus/Minus Query 47789 GGTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCC 47845 |||| ||| |||||| |||| || | ||| ||| ||| || | ||||| ||||| Sbjct 25392929 GGTTGCTTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCC 25392870 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | || || || || || || ||||| || || || ||||| ||||| | ||| || Sbjct 25392869 CATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAAT 25392810 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| ||||| || ||||||||||| || | || |||| || ||||| || | || Sbjct 25392809 ATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAG 25392750 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || || || || || || || || || || ||||||| |||||||| || || Sbjct 25392749 CATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGAT 25392690 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || || ||||| || || ||||| || || || |||| || | || Sbjct 25392689 GAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAAT 25392630 Query 48086 TATCGATGTTACCGTTTCCTCACTTGG--TGGATACAACAAATGTTTAAACATTAAACAT 48143 ||| | |||| | | ||| || || ||| || || || ||||| | || Sbjct 25392629 TATTTCTTTTACTCTCTGCTCCGAGGGCTTGTGTAC--CAGGTGCTTGAACATCAGGCAG 25392572 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||| ||||| || ||||| |||||||| ||||| | ||| || |||||||| || || Sbjct 25392571 GCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCC 25392512 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| ||||| ||||| |||||||| ||||||| || ||||| ||||||||||| || Sbjct 25392511 GGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATT 25392452 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATC 48320 |||||||| || || || || || || ||||| || | || || |||| ||| Sbjct 25392451 CCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATC 25392392 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || || ||||| |||||||||||||| |||||||||||||| || || || || ||| Sbjct 25392391 CAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAG 25392332 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 ||| | | | |||| ||| |||||||| |||||| || || | ||||| ||||||||| Sbjct 25392331 AGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCG 25392272 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 ||||| || || || || || || || || || || ||||| | || ||||||| || Sbjct 25392271 GAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGA 25392212 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 || || | |||||| || |||| |||||||| ||||| |||||||| || ||||| Sbjct 25392211 ACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAG 25392152 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || || | ||||| ||||||| | | || | | |||| | ||||| | Sbjct 25392151 AAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGA 25392092 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 ||||| || || | || || || || || |||||||| || ||||| ||||| || ||| Sbjct 25392091 ATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 25392032 Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAA 48713 || | ||| |||||| ||||| || ||||||| Sbjct 25392031 ATCTGCCAGATATCATGGTATTCGA-TGGGAAA 25392000 >seq1 Length=282763074 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | |||||||| || || |||||||| || ||||||||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || ||||| || || | ||| | ||||||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || ||||| ||||||||| || Sbjct 167546854 ATGTGCTGTGGTCTTTCAGCC 167546834 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | || Sbjct 167557811 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 167557752 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 167557751 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 167557692 Query 77247 TTTCTGAGACC 77257 ||||| | ||| Sbjct 167557691 TTTCTTATACC 167557681 Score = 107 bits (118), Expect = 3e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||| || | ||| |||||||||||||| | ||||| ||||| || ||||| || || | Sbjct 167542545 CACTGAACACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACAGCGATCCTTGCTGCCAGGA 167542486 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | ||||| ||||| || | ||||| | ||||| ||| | || || || | | || | Sbjct 167542485 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCAGCTGTCTCAGCAGCCAGGGTGTCCA 167542426 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 || | || ||||||||| | ||||| ||||| || |||||||||| ||| Sbjct 167542425 GTTCCACTGTGGTGACCCCACTGTATAGGCCTTGGATTACTTTCATGGTGAT 167542374 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 76969 TTTGAGGAATTTCCCA 76984 | |||| |||||||| Sbjct 167560686 TCTGAGAGATTTCCCA 167560671 Score = 93.3 bits (102), Expect = 6e-14 Identities = 230/339 (68%), Gaps = 19/339 (6%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||| ||||| || || ||| ||||| ||||| |||| ||| || | |||||| ||| Sbjct 48565169 TCCCGTGGAGCCGAAGCCTCCTGAGCCTCTCT--CAGTGTTATCCAGTGTTTGCACCTCC 48565226 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| || || | | || || || || || | ||||| | || Sbjct 48565227 TCTAAGTCTGGATAAAGAATCCGCTCCCAAATGAGCTGCGCGATCCGGTCACCTTTTTTC 48565286 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | || || | ||||||||| ||||| ||| | ||| || | | |||||||||||| Sbjct 48565287 ACCTCGAACTTCTCTTTTCCAAAATTGAACAGCACGACGCCGACATTTCCTCTATAATCT 48565346 Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT-ACCT--TTTAGAGACAGTCCAGATCTAGGA 46110 || ||||| || || |||| ||||| || | | |||| || || ||||| | ||| Sbjct 48565347 TCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACAGCCAAGCCAGAACGTGGA 48565406 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || | |||||| || ||||| || | || ||| |||| ||||| || | ||| Sbjct 48565407 GCCACTCTTCCGTAGCACCCAGAA----GGAACAGCTATCTGAATGTCTGTCTTCA-CAA 48565461 Query 46167 TCTCCTTTCTCCA-GGA-GGGATAGTATAGTCGTACGCA 46203 ||||||||| ||| || || ||||| || || ||| Sbjct 48565462 -GGGCTTTCTCCATGGATGGAATTGTATAATCATAGGCA 48565499 >seq117 Length=147991367 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | || || |||||||| || || ||||| ||||| ||||| ||| Sbjct 43887777 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 43887718 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || |||||||| || || || || Sbjct 43887717 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGC 43887659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660507391200