Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_031081.1 Length=45206 Score E Sequences producing significant alignments: (Bits) Value seq473 91.5 4e-14 >seq473 Length=26706 Score = 91.5 bits (100), Expect = 4e-14 Identities = 229/341 (67%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 6587 GCATTCCCGCCGTGTACTGATCTGGCGGTGAGCGGTGC--GCCAGCTTTCCCGCGCAAAC 6644 || |||| || || ||||| || || || || ||||| |||| || || || || | Sbjct 26368 GCCTTCCATCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCATTTTGCCAGC--AAGC 26425 Query 6645 GCGCCCGCGACCCGGCCTTCCAGCTTAAGGCGGTGCGC-ACCGCGAAGATCGCCGCGTAC 6703 | | || || ||| |||||| || || || ||| || || || |||||| || Sbjct 26426 GTGAACGTGATCCGCTATTCCAGGAGAAAGCTGT-CGCTACTGCCCGTATTGCCGCGAAC 26484 Query 6704 CTGGGTGACTTCTTCGAAGTGCCGTATATGATTGAGAATCCGCGCAGTGTGCTTTCCACC 6763 | || || | | | ||| | || || |||||||||||| || || || || | Sbjct 26485 ATTGGCGATAGCATGGGCGTGACTTACATAATTGAGAATCCGGTGAGCGTCCTGTCATCT 26544 Query 6764 CAGTGGCGCAAGCCGGATCACTCATTCGACCCGTGGGAGTATGGGGGATATCTGCCGGAG 6823 ||| | || || ||||||| ||| | || ||||||||||| || ||||| || ||| Sbjct 26545 GCATGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTATGGCGGCTATCTTCCTGAG 26604 Query 6824 GATGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGCGATTCATATCCGAAGCT 6882 |||||| || || |||||| || ||| |||| |||||| | || |||||| Sbjct 26605 AATGACGCGCATCCCTGGTTCCCGATGTATATC-GCGCCGCGCGATGCTTACCCGAAGAA 26663 Query 6883 GACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 6923 ||| || | |||||| ||| |||| |||||| |||| Sbjct 26664 GACTTGTCTGTGGACCTCTGACGACTTCGTTATGCCGGAGA 26704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144535960853280