Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_031113.1 Length=44513 Score E Sequences producing significant alignments: (Bits) Value seq473 91.5 4e-14 >seq473 Length=26706 Score = 91.5 bits (100), Expect = 4e-14 Identities = 229/341 (67%), Gaps = 8/341 (2%) Strand=Plus/Minus Query 3147 TCTCTGGCATACGGAAGCCGTTGCCGGTCCATAAGCAGGTCAGCTTCGGATATGAATCGC 3206 |||| |||||| |||| ||| |||||| | || ||| |||||| || | ||||| Sbjct 26704 TCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGC 26645 Query 3207 G-GGCGTTGATGTATTCCGGGAAGAGCGGGTGTACGTCATCCTCCGGCAGATATCCCCCA 3265 | |||| ||| || |||||| || || |||||| ||| || ||||| || ||| Sbjct 26644 GCGGCGC-GATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCCA 26586 Query 3266 TACTCCCACGGGTCGAATGAGTGATCCGGCTTGCGCCACTGGGTGGAAAGCACACTGCGC 3325 |||||||| || | ||| ||||||| || || | ||| | || || || || | Sbjct 26585 TACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACC 26526 Query 3326 GGATTCTCAATCATATACGGCACTTCGAAGAAGTCACCCAGGTACGCGGCGATCTTCGCG 3385 ||||||||||| || || | ||| | | | || || | || |||||| || || Sbjct 26525 GGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCA 26466 Query 3386 GT-GCGCACCGCCTTAAGCTGGAAGGCCGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTGG 3444 || ||| || || || |||||| ||| || || | || || || || || ||| Sbjct 26465 GTAGCG-ACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTT--GCTGGCAAAATGG 26409 Query 3445 C--GCACCGCTCACCGCCAGATCAGTACACGGCGGGAATGC 3483 | ||||| || || || || ||||| || || |||| || Sbjct 26408 CGAGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGC 26368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142318386002250