Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq219 165 1e-35 seq55 150 3e-31 >seq219 Length=114033958 Score = 165 bits (182), Expect = 1e-35 Identities = 214/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8290 GAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCT 8349 ||| | ||| || |||||||| || || || | |||| ||||||||||| | || | Sbjct 67356803 GAAAGAGGCAAAGGGACACCCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGT 67356744 Query 8350 CTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGA 8409 |||| ||||| || ||||| ||||| ||||||||||| || |||||||| || || Sbjct 67356743 GTTGATGATCCTAAAACCCACTTCTCCTCCGAAGGTGCTAGGTTTCCAGTATTGAGGAGA 67356684 Query 8410 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCT 8469 |||||| || |||| |||||||| | |||||| ||||| || | || | ||| | Sbjct 67356683 ACAGATGGGATTACCCATAAGGCCTTTCAAGGAGAATGGAGCTCCAAGTTCTACCATGGT 67356624 Query 8470 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCAC 8529 ||| || ||||| || | ||||| ||||||||||||| | ||| ||||| |||| Sbjct 67356623 CTCCCCAAAGATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCGGGATACAGTTCCAT 67356564 Query 8530 AGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||| ||||| | | || ||||| || || || ||||||| Sbjct 67356563 GGCATCGATGTCATGGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCTG 67356508 Score = 113 bits (124), Expect = 6e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || ||||| || ||| | | Sbjct 67353163 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCCCTGGTG 67353104 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| ||||||||||||||||| ||| ||| |||||| | | ||||| | Sbjct 67353103 TAGTAGGAGAGGTTGGAGAAAGCTTCCCAACTTTTGTAACCGTAGTGCACATTGTAAGTT 67353044 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 67353043 GGTGGGCTGTCAATCAAATGTGATCTGGCTGA 67353012 >seq55 Length=177699992 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| ||| ||||| || || ||||| |||||||| ||||||||| | ||||| Sbjct 15581296 TTAACGATGTTGAAACCCACATCACCACCGAATGTGCTGGGTTTCCAGTACTCTGGGGAA 15581237 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| | | |||||| ||||||||||| |||||||||| ||| | |||||| Sbjct 15581236 CAGATGGGATTCCCTAGGAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCTATCATGCTC 15581177 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || |||| || |||||| || ||| |||| || | || | ||| | ||| | | Sbjct 15581176 TCCCCAAAGAGGGAGTTGGGCTGGCACTTCTCCAGCATCAGCCCCGGGTAGAACTCTAAA 15581117 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || |||| ||| || || || || | || || || |||||||| |||||||| Sbjct 15581116 GCATCGATGTCACCATATAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCTGT 15581061 Score = 102 bits (112), Expect = 1e-16 Identities = 131/180 (73%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| |||| ||||| Sbjct 15572501 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCATGTAGGATGC 15572442 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | || ||||| | ||| || || | |||||||| |||| | | | | Sbjct 15572441 TCCTCCTTCAGCAAGTCACACACACGGTTATGCTCGCGCAGCCAGATCGTGGAGAAGAGC 15572382 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || || || | || ||||| |||| || || ||||||| || ||||||||| Sbjct 15572381 ATCAGACCCGGGAGCAACCCAAACACCTCCTGGCCCACAGCCATCTGC---TTTTCGGGC 15572325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716868242283200