Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq307 473 9e-129 seq185 360 1e-94 seq793 329 2e-85 seq287 123 2e-23 seq110 87.8 1e-12 >seq307 Length=5409467 Score = 473 bits (524), Expect = 9e-129 Identities = 446/567 (79%), Gaps = 1/567 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct 1578553 AAAACACCTTCACATTAATTGTTCTTCTCATACACTTCAAATTTGTACTTAATGCCTTTC 1578494 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || | || ||||||||||| ||| |||||| | |||||| |||||||| | | Sbjct 1578493 TCCTCCTGGATATCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTATATTTCTCCAAA 1578434 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| || ||||||||| ||||||| |||||| || ||||| | ||| ||||||| ||| Sbjct 1578433 TCAACTTATGGAAAAAATGTGTCACTTTCAAATTCCTGCATAAGCCTTGTCACAAGTAGT 1578374 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| |||| ||||| ||||| |||||||| ||||| | || ||| Sbjct 1578373 CTAAGATGGCCTGGCCTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTACCCAA 1578314 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| ||||||| ||||||||||||||| || |||||||||| |||||||| | | Sbjct 1578313 ACCATGTCCACTTTATGTGCTAATTCTGGCTGCTCAATAAGTTTTAAGGCATCATCCAGA 1578254 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTA-GTTCCTTGCTGAGAACAAC 4313 || ||||| | ||||| || || |||||| | |||| | ||| | |||||||| | Sbjct 1578253 CTTTTAGCAAGAAAATAAGTTCCTTGTGGAGGTTCCTGGAGGTTTTCTACTGAGAACTAT 1578194 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 |||||||||| | |||||||| ||||||||| ||||| |||||||| ||||| |||| Sbjct 1578193 ATTAATTCTGTCCTTTAAAGGTTGGTTCTTCTTGGGAATAGAGAACCATGTCTTCCTACC 1578134 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||||||||||||||| Sbjct 1578133 CATAATCACCAAATTCTGTTTACCTTCTACTGATGAGGTTGTGGTCATTCTTTGGAAATA 1578074 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 || || |||||| | || ||||| |||| || || | ||||| ||||||||||| Sbjct 1578073 CTTTAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTT 1578014 Query 4494 TTGAGCTACAGCAACAATGCAGTTTAG 4520 || | || || ||||| |||||||| Sbjct 1578013 CTGGGACACGGCGACAATACAGTTTAG 1577987 Score = 159 bits (176), Expect = 3e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26950 GAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATG 27009 |||||||||| || || || |||||||| |||||||| ||||||||||| |||| || | Sbjct 226934 GAACAATGGGGGTGACACAGGTGCAGCCCACAGTCACCAGCATCTTCTCCAGCCGGAAGG 226875 Query 27010 AATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | | || ||| | || | | | |||| || | ||||| || ||||| ||||| | Sbjct 226874 AGTGGGGACAGTGCCGAGACTCCCTTCGCAGAACCAAGATCTCCTGCTGGATGGGGACGG 226815 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 |||||||||||| |||| | ||||| |||| ||| |||||||| ||| | | ||||| | Sbjct 226814 AGTTCATGTGGTGGTCTTCCTTCCCTTCAGTATTGACACATCCCCAGTGGAGGCACTTGG 226755 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| |||||||| || ||||| || | || ||||| || Sbjct 226754 CCTCCCAGATCACAGAAGGGTATCTCTCAGGGTCCTCATTCCG 226712 >seq185 Length=4399659 Score = 360 bits (398), Expect = 1e-94 Identities = 419/560 (75%), Gaps = 8/560 (1%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| ||||||||||||||||||||| ||| | |||||| || || |||| Sbjct 181602 ATTAATCATTCTTTGCATATACTTCAAATTTGTACTCAATGCCTTTCTCCTCCTGGACAT 181543 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||| || ||| ||| || |||||| |||||||| | |||||| ||||||| Sbjct 181542 CAGAAAGAATACCTGGGTATACTGGGGGAAGTTTATATTTCTCCAAATCAAAGTCTGGAA 181483 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 ||| ||||||| |||||| | ||||| ||||| |||||||| ||| |||| | || || Sbjct 181482 AAAGTGTGTCACTTTCAAATTTCTGCATAATCCTTGTCACAAATAGTCTAAGGTGGCCTG 181423 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | || | | ||| ||||| |||||||| ||| | | |||||| |||||||| |||| Sbjct 181422 GTTTCTTCGTGGTTTCCTTATAAACAGAACTGCCTTCCACTATCCAAACCATGTCCACTT 181363 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTA-AA 4266 ||||||||||||| || || ||| |||||| |||| | | ||| || || | || Sbjct 181362 TATTTGCTAATTCCAATTGCTCAATAACTTTTAAGGCATTGACCAGACTTTTGGCAAGAA 181303 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTC-TGCC 4325 ||||||||| || ||| | || || || || |||||||| | |||||||| | | Sbjct 181302 AAATGAGCTTCTTGGGGAGGTTCTTTAAGGTCTCAACTGAGAACTAAATTAATTCTTTTC 181243 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 ||||||||| | ||||||| ||||| |||||||| ||||| |||||||||||||||| Sbjct 181242 CTTTAAAGGCTGATTCTTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACTAA 181183 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAAT-GT----TTAAAA 4440 | | || |||| | || || || | || ||||||||| |||||| || || || Sbjct 181182 AGTTTGCTTATGTTCTA-TGAGGAAGATGTGGTCATTCTTGGGAAATAGTGTACTTGAAT 181124 Query 4441 TCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCT 4500 |||||| | || ||| | ||| | || | |||| |||||| |||| || | Sbjct 181123 TCATTCCTGAGCGGGGGCTACAGCACGCCCCCGTTCTTGCAGATGCCCTTGTTCTGGGAC 181064 Query 4501 ACAGCAACAATGCAGTTTAG 4520 ||||| |||||||||||||| Sbjct 181063 ACAGCGACAATGCAGTTTAG 181044 >seq793 Length=714716 Score = 329 bits (364), Expect = 2e-85 Identities = 405/550 (74%), Gaps = 5/550 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||||| |||||| || | | ||| ||||||||||| ||| ||| |||||| Sbjct 551478 AAAACACATTCACATTAATTGTTATCTTTATACACTTCAAATTTATACATAACACTTTTT 551537 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || ||| ||||||||||| ||| |||||| | |||||| ||||||| | | Sbjct 551538 TCCTCCTGGACACCAGAAAGAACACCTGGGTATTCTGGGAGAAGTTTACATTTCTCCAAA 551597 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| || ||||||||| |||| | |||||| || |||||||| || || ||| ||| Sbjct 551598 TCAATTTATGGAAAAAATGTGTTGCTTTCAAATTCCTGCATGATTCTTGTTACAGCTAGT 551657 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 || ||| || ||| | |||||| ||| ||||| ||||||| ||||| | | |||| Sbjct 551658 CTAGGATGGCCTGGCTTGTTCATAGTTTCCTTATAAGCAGAACTGCCTCCCACTGTCCAA 551717 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||| ||| || || |||| |||||||| || | || ||||||| ||||||| | | Sbjct 551718 ACCACGTCCAC-TTCTTTGTTAATTCTGATTGCTTAATACGTTTTAAGTCATCATCCAGA 551776 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || |||| ||||||||||| ||||| | | ||||| ||||| | || ||||| | Sbjct 551777 CTTTTGGCTAGAAAATGAGCTCCATGTGAAGGTTCCTTGAGTTCTCTACTTAGAACTGGA 551836 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||||||| | |||||||| | | |||||| |||| |||| || ||||| ||||| Sbjct 551837 TTAATTCTGTCCTTTAAAGGTCAGCTCTTCTAGGGAAGAGAGAGTCATGTCTTCCTACCC 551896 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| |||||||||||| | | | | || || || ||| |||| |||||| Sbjct 551897 ATAATCACAAAATTCTGTTTACC---TTCTGCTGAGGTTGTGGTCCTTCTCCGGAAATTC 551953 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 ||||| |||||| | | | ||||| || | ||| | | ||||| ||||||| || Sbjct 551954 TTAAATTCATTCCTGA-ACGGGGCCAGGGTAGGTTTCTGTTCTTGCCGTTGCCCATCTTC 552012 Query 4495 TGAGCTACAG 4504 || | |||| Sbjct 552013 TGGGACACAG 552022 >seq287 Length=2234162 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | || ||| |||||||| ||||||| |||||||||||| Sbjct 269545 TTATAAACAGAACTGCCTCCCACTACCCAAACCATGTCCACTTTATGTGCTAATTCTGGT 269486 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || ||||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 269485 TGCTCAGTAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 269426 Query 4285 AGCTCC 4290 | ||| Sbjct 269425 GGTTCC 269420 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 263401 CTTGAGGTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCCGG 263342 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 263341 AATAGAGAACCATGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 263293 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 278903 AAAACACCTTCACATTAATTGTTCTTCTCATATACTTCAAATTTGTACTTAATGCTTTTC 278844 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || | || ||||||||||| ||| ||| Sbjct 278843 TCCTCCTGGATATCAGAAAGAACACCTGGGTAT 278811 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 273271 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 273212 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||||| |||||||| ||| ||| | || ||| |||| ||||| || Sbjct 273211 AATCCTTGTCACAAATAGTCTAACGTGGCCTGGCCTGTTCATGGCTTCCTT 273161 >seq110 Length=1713729 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||||||||| ||||| || || || | ||| |||| Sbjct 1663378 CTTTGTATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTT 1663437 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || || || || || ||||| |||||||| | Sbjct 1663438 CTTCTCTGTTGGAGAATCCTAGGCTGTCCAAGAAGTTTCGGGACCCATTGGCATCCCAGA 1663497 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCC 102195 | | ||| || | ||| || || || || |||||||| Sbjct 1663498 TTTTCACTCCCTTGGATGACAGTTCCTTAGCGTTTGTAGATCC 1663540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361187875261133