Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq560 264 1e-65 seq100 181 1e-40 seq23 141 1e-28 seq543 122 1e-22 >seq560 Length=2821508 Score = 264 bits (292), Expect = 1e-65 Identities = 265/343 (77%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 1221119 AGCAGGGCTTCGATGTCAGGCTCAATGTCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 1221178 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| ||||||||| ||||||||||| ||||||||||| Sbjct 1221179 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCGACGTCGTTGCGA 1221238 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 1221239 CACACTGGAGACCAGGTGATGAACTTCGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1221298 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| || | || |||||||||||||| || || ||| || || || ||| Sbjct 1221299 GGGGCAGGCAGAGCTTGGCGCAGGAAGGCGAAGAGGGGGTGCGCCTGCGCGCCATTTACC 1221358 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| || ||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1221359 TCGCACTTCTCAAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTA 1221418 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG-GTGA 83398 |||||| || |||||| | || | ||||| ||||| |||| Sbjct 1221419 AGGGAATTCAGGATCTCTTCGTTTTTAGCGTTCTCCTGCGTGA 1221461 Score = 187 bits (206), Expect = 3e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || ||||| ||||| ||||| | || |||| Sbjct 1221689 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 1221748 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 1221749 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1221808 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | | || | ||||| || || || |||| Sbjct 1221809 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAACCCAGGCTCATGGGCTCCCCGCCGG 1221868 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | ||| ||||| ||||||| ||||| || Sbjct 1221869 CCAACGGACGTGCAGAGAAGGAATACACGGA 1221899 >seq100 Length=8780564 Score = 181 bits (200), Expect = 1e-40 Identities = 319/461 (69%), Gaps = 19/461 (4%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| |||| || | | ||| | ||| | ||||| ||||||| Sbjct 1573423 AGCAGGGCTTCGATGTCAGGCTTCATGTGGATGGTTAGAAAGCAGCAGCTGTCCCTGCGC 1573364 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| || || | || |||| |||||||| ||||||||||| |||||| || || Sbjct 1573363 ATAGGCACACCATCTGGGCCTACCAGGAACTTCTTGAAGTTCCAGGTGACGTCGGTG-GG 1573305 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||| |||| || ||||| | || | ||| | |||||| ||| Sbjct 1573304 GACACTGGAGACCAGATGATGAACTTGGGGTGGGTCGTGCGCGCAGTGGCGTCGTCACTA 1573245 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| |||| || ||||||| ||||| || || ||| || | ||| || Sbjct 1573244 GGGGCAGGCAGAGCCTACCGCAGGAAGGTGAAGAAGGGGTGCGCCTGCGCGCTGTTCCCC 1573185 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | |||||| || ||| | ||||| |||||||| | | | | | ||| || ||| Sbjct 1573184 TGGCACTTATC----AGCGTGAAGTTGGGCTCGAACCAGCTACGGCGTGGGAAGT-ATTC 1573130 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| ||||||| |||| ||| || ||||| || ||| ||| || || | | Sbjct 1573129 AGGGAATTTCAGATCTCTTTGTTCTTGGCATTCTCCTGATGCACGATCTGCTTGCAAGAG 1573070 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || ||||| | ||| || | || || ||| || | |||||||||||| Sbjct 1573069 AAGTGGAGCACCA-CAGGCCTGGGGC-CCGAGGTGCGGAGGCAGCTCGTTCA-------- 1573020 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517 |||||||| || | |||||||| |||| |||||||| Sbjct 1573019 ---TCCCGGACGGTTGTGCCTCAGAGCAACGCCACGTTCTC 1572982 >seq23 Length=6134928 Score = 141 bits (156), Expect = 1e-28 Identities = 298/431 (69%), Gaps = 19/431 (4%) Strand=Plus/Plus Query 83142 AGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCT 83201 |||||||||| |||||| ||| || || || | ||||||||| |||||| |||| || Sbjct 3209769 AGAACTTCTCCAAGTTCTAGGTGACATCATTACATCACACTGGAAACCAGGTGATGAACT 3209828 Query 83202 GGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGG 83260 |||| | ||| |||| ||| ||| | | || || ||||| || ||||| ||||| Sbjct 3209829 TGGGGCTGGTCATGAGCAGTGG-CAT--CATTACTGGGGGCCGGAAGAGCCTCCTGTAGG 3209885 Query 83261 AAGGCGAAGAGCGGATGTGCCCTTG--CACCGTTGACCTCGCACTTCTCGAAGAGCATAA 83318 ||| |||||| || ||||||||| |||| | ||||||||||||| | ||||| | Sbjct 3209886 AAGCTGAAGAGGGG--GTGCCCTTGTGCACCAGTCCCCTCGCACTTCTCAGAAAGCATGA 3209943 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | || |||||||| | || | ||| | || | ||| | |||| || |||||| | | Sbjct 3209944 ATTTGGGCTCGAACCTGTCCTGAGGTCTGAGGAACTTGAAGGAATTCAGGATCTCTTCCT 3210003 Query 83379 TCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACT-ACCAGCCCC 83437 || ||| ||||||| || | | || | || || ||||| ||| ||| ||||| ||| Sbjct 3210004 TCCTGGC-ATTTCCTGATGCCAGCACCGCTTGCATGGGAA-GCAAATACTGACCAGGCCC 3210061 Query 83438 CGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCT 83497 | | | ||| || |||| ||| || |||| | || ||| ||| || ||||| Sbjct 3210062 CTGG--CAGAGGTGCTGCTGATGCTTGT---TCTGGGCATAGTCCTGGATAGTTGTACCT 3210116 Query 83498 CAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACA 83557 | ||| ||| | | || | | | |||| | | ||| | ||| || | ||||||| Sbjct 3210117 CGGAGCGACACCGCATTTTTGGTCAGCAGCATGTTGGCCCCCAGGAA-CCCAGGCTCACA 3210175 Query 83558 GGTTCTCCTCC 83568 || ||||||| Sbjct 3210176 GG--CTCCTCC 3210184 >seq543 Length=2658419 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 619882 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 619940 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 619941 TGGTGCACCTCTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 620000 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 620001 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGTCGCGCATCAAGCTCATCCGCCACTAC 620059 Query 50588 GTGCAGTTGCTGCACCCG-GCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||| |||| |||| ||| | | ||||| |||||||||| ||||| ||| Sbjct 620060 GTGCAGCTGCTCTACCCCCGCGCCAAG-AACGACCGCGTGTGGACGCTGGAGTTCGTGGG 620118 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 620119 CAAGCTGGACGAGCGCTGCCGGCGCCG 620145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608687345945320