Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq332 1640 0.0 seq386 183 2e-41 >seq332 Length=3629251 Score = 1640 bits (1818), Expect = 0.0 Identities = 1351/1647 (82%), Gaps = 40/1647 (2%) Strand=Plus/Plus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || ||||| || ||| ||||||| |||||||||| ||| || ||| ||| ||||||| Sbjct 2551935 TCCTAGGCCGGTCTTTACTGAGGTTATTTGTCTAGTAAAGGAATGTATTTTTGCCATCAC 2551994 Query 107200 TCTGGAGTTGAACTT--GATGTTCT--------------GGATTAGTTTGTAATTAAAGG 107243 | |||||||| |||| ||||||| || ||||| ||||||| |||| Sbjct 2551995 TTTGGAGTTGCACTTTTGATGTTCCTGTGAATACATTCAGGGTTAGTGTGTAATTGAAGG 2552054 Query 107244 CATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTG 107300 | ||||||||||||||||||| ||||||||| || | | |||||||||||||| ||| Sbjct 2552055 CGTTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCGTCCTTGTGCCCAAACTCTACTG 2552114 Query 107301 ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTG 107360 | || ||| || ||| |||| | |||||||||||| | || | | | | | ||| Sbjct 2552115 GTTTCTCATTCCGTGAGGATGATTTGGTGGAAGAAGATACAGTGGCAGCAGCGTTACCTG 2552174 Query 107361 TGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTT 107420 |||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||| || Sbjct 2552175 TGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGGCTTTGTCTCAGATTG 2552234 Query 107421 AAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGG 107480 |||||||| | |||||| |||||||| ||||||| || || ||||| | ||||||||| Sbjct 2552235 AAATGTGACTTTGATTCCCTGGATCTGAAGTCCAGAGATTTTCAGAGCCGGCACTGTAGA 2552294 Query 107481 GACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATC 107540 ||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| Sbjct 2552295 GACATCTTGTACAAGTCCCTGAAACTGCCAGCAAAGAGATCCATCAACTGTTCTCGGATC 2552354 Query 107541 ACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAA 107600 | | |||||||||| | |||||| | |||| | || ||||||||||| | ||||| Sbjct 2552355 ATCCAAGGGGACCAGCAGGCAGTGATTGAGGCTGTGCTGGACAACCTGGAGATCAAGAAC 2552414 Query 107601 AAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 |||||| |||| |||| | ||| | ||| | ||||| |||||||||||||||| ||| Sbjct 2552415 AAGCGGAAGCCTTTCACAGACACTGACTACTTTAACATGACCAGAGACTGTGAGCACTTT 2552474 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 ||||| ||||||||||||||| |||||| ||||| |||||||| ||||||||| ||| Sbjct 2552475 AAGGCTGAAAGGAAGTTCATACGGTTCCCTCTGAGCCAAGAAGAGTCAGACTTCCCTATT 2552534 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||||||||||||||| || |||||||||||| | |||| ||||| ||| Sbjct 2552535 GCCTACTCAATGGTGGTCCATGAGAAAATAGAAAACTTTGAAAGATTGCTCCGAGCTGTG 2552594 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 ||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| Sbjct 2552595 TATGCCCCTCAGAACATATACTGCATCCACGTGGATGAGAAATCCCCAGAAACTTTCAAA 2552654 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 2552655 GAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGTTGGTT 2552714 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 2552715 CGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAATTGTATGGAAGACTTG 2552774 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 2552775 CTCCAGAGCCCAGTGCCATGGAAATACTTACTAAATACATGTGGGACAGACTTTCCTATA 2552834 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 2552835 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAG 2552894 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC 108140 || || ||||| |||||| |||||| | |||||||||||| | ||||||| | |||| Sbjct 2552895 TCAGAAATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCACTATGAGACAAAAGAC 2552954 Query 108141 ACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 ||| ||||| |||| |||||||||||| |||||||||||||| |||| ||||||||| Sbjct 2552955 ACATTGTACGTAACCAACAAGATGAAGGATCCTCCCCCTGATAACATACCTATGTTCACA 2553014 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 |||||||||||| |||| || || |||| |||||||| |||||||||||| ||||| || Sbjct 2553015 GGGAATGCCTATATTGTAGCTTCCCGAGACTTTGTCCGACATGTCTTAGAGAACCCCAAG 2553074 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 |||| | |||| |||||||||| ||||||||||||||||| || || || || |||||| Sbjct 2553075 TCCCGACAACTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAGCATCTATGGGCC 2553134 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 || ||||||||||| || ||||||||||||||| |||| |||| |||||| |||| || Sbjct 2553135 ACGCTTCAGCGTGCACCATGGATGCCTGGCTCTATTCCCTACCACTCCAAGTTTCACGTC 2553194 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 ||||| ||| | ||||| |||||||| |||||||||||| ||| |||||| | |||| Sbjct 2553195 TCAGATATGGCAGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGT 2553254 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 |||||||| ||||||||||| |||||||||||||| | | || | ||||| ||||||||| Sbjct 2553255 ATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTATCTGTATTTACGGG 2553314 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | || |||||| | |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 2553315 ACTGGAGACCTGCATTGGATTCTTCAAAACCATCACCTCTTGGCCAACAAGTTTGACCCA 2553374 Query 108561 AGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTAT 108620 | ||||||||| || || || ||||| |||||||||||| |||||||||||||||||||| Sbjct 2553375 AAGGTGGATGACAATGTTCTTCAGTGTTTAGAAGAGTACTTACGTCATAAGGCCATCTAT 2553434 Query 108621 GGGACTGAACTTTGAG----------------CTGC--ACTGTGGGCCAGGGAC-TGTGC 108661 ||||||||||| |||| ||| ||||||| || | || |||| Sbjct 2553435 GGGACTGAACTCTGAGATAAACTATAAGAGGATTGCTACCTGTGGGGCAAGAACATGTGG 2553494 Query 108662 CAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCAT 108721 |||| | | | |||| || ||||||||||| ||| |||||| || |||| | Sbjct 2553495 ATACATACTTCAGATGGGCTGGGACAATGTGGGGTGGGAGACCAGGGCTCTGCAATCTGT 2553554 Query 108722 GGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||||||| | || || |||||||| Sbjct 2553555 GGCATCCCCAA--GTTAGGGGGCTGCT 2553579 >seq386 Length=6704978 Score = 183 bits (202), Expect = 2e-41 Identities = 586/894 (66%), Gaps = 39/894 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 14401 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCCATTGCGTATTCTATAGTGGTTCATCACAAA 14460 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 14461 ATCGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATCTCTACTGCATT 14520 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | ||||| | || ||| |||||| Sbjct 14521 CACGTGGACAGAAAATCAGAGGATTCCTTTTTGGCCGCGGTGATGGGCATCGCCTCCTGC 14580 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| |||||||| || ||| ||||| |||||||| ||| | Sbjct 14581 TTCAGTAACGTCTTCGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCCTCTTGGAGTCGG 14640 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| ||||| | || ||| | | ||||| |||| || Sbjct 14641 GTTCAGGCCGACCTCAACTGCATGCAAGACCT-CTACAG-GATGAGTGCAGACTGGAGGT 14698 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || ||||| || || ||||| ||||| |||| | Sbjct 14699 ACTTGATAAATCTTTGCGGCATGGATTTCCCTATTAAAACCAACCTGGAGATTGTCCGGA 14758 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 ||||| ||| | |||| | |||| | ||||| ||| | || || | | Sbjct 14759 AGCTCAAATCGTTAATGGGTGAAAACAACCTAGAGTCCGAGAGAATGCCATCCAAT---A 14815 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AGGTGACAGACACACTGTACCCT-ACCAGCAA 108160 ||||| | | |||||| | | ||| || || | | | | || |||| || Sbjct 14816 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTTA-----ATGGAAAGCTGACCAACAC 14870 Query 108161 GATGAAGGAC---------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 | || |||| ||||| | ||| | ||| ||||| |||| | |||||| Sbjct 14871 GGGGACGGACAAAATGCACCCTCCTCTTGAAACG---CCCCTGTTCTCAGGCAGTGCCTA 14927 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGAC 108270 |||||||| | | | | ||| |||| |||| || || |||| ||| Sbjct 14928 TTTTGTGGTCAGTAGGAAGTATGTGGGCTATGTGCTAGAGAATGAAAAGATCCAGAAGTT 14987 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 | | || |||| ||||||||| || || || || || | ||||||||||| | ||| Sbjct 14988 TA-TGGAGTGGGCCAAAGACACTTACAGTCCAGATGAGTATCTCTGGGCCACTATCCAGA 15046 Query 108331 GTGCTCCGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGAC 108386 | | ||| | | | || ||||| ||| |||| |||| |||||| |||| || ||| Sbjct 15047 G-GATCCCCGAAGTCCCAGGCTCACTGTCCCTAAGCCAG---AAGTATGACATGTCTGAC 15102 Query 108387 ATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGG 108446 ||| || || || ||| ||||||||||||||||| || || |||||| || |||| Sbjct 15103 ATGCAGGCGATTGCGAGGTTCGTCAAGTGGCAGTACTTTGAAGGTGATGTCTCCAAGGGG 15162 Query 108447 GCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGG 108506 || || || | |||||| || |||| | | | | || | | ||| || || Sbjct 15163 GCCCCCTACCCGCCCTGCAGCGGGGTCCACGTGCGTTCTGTGTGTGTCTTCGGAGCAGGT 15222 Query 108507 GACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 ||| || ||||||| || | || || ||| | || || |||||||||||| || Sbjct 15223 GACTTGAACTGGATGCTACGAAAGCACCACTTGTTTGCCAACAAGTTTGACACG 15276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348207750982542