Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq688 134 1e-26 >seq688 Length=229267 Score = 134 bits (148), Expect = 1e-26 Identities = 378/579 (65%), Gaps = 20/579 (3%) Strand=Plus/Plus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 |||||||||| | | || || |||| |||| | ||| || ||| | || ||||| Sbjct 106282 ATGAATTTCCTCTGCTGACAACCAAACCTGTATCCTAGAAGGGTGTTTTGGAGGAGTTGC 106341 Query 20099 TATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTT 20158 | |||||||| || ||||| ||||| || || || || ||||| || || | Sbjct 106342 TGTGGTTTATCAAGGGATCCACAAACGCTTGGGAACTGTCTTCCAAGGGAGTGAAAATCT 106401 Query 20159 GGAGCGCACATGGATC-TAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 || | || |||| || | || | | || ||||| | ||| |||| | |||| Sbjct 106402 GGGACTCAAATGGGTCCTGAG-ACCTCTTGGACAGCCG-GTATTCTGCAACAGAGAAGAA 106459 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| || || || || ||| ||||| |||| | ||| || Sbjct 106460 GGGGACTTAGGCCCAGTTTATAACTTTCAGTGGAAA--------------ATACAAAGAT 106505 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 | ||| || |||||| ||| ||||||||||| ||| | ||||| || | | | ||| Sbjct 106506 AAGAATTCAGATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAGGTGACTGACACAATC 106565 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||| | ||||||||||| || | || | ||||| | |||||| | ||| Sbjct 106566 AAAACCAACTGTGATGACAGAAGAATCATCCTGTGTGGGTGGAATCCAAAAGATCTTCCT 106625 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 ||||||||| |||| || ||| || ||||| || ||| | | ||| ||| || Sbjct 106626 TTAATGGCT---CCTCTCTGCCATTCCCTTTGCCAGTTCTACCTGGAAAATGGTGAGCTG 106682 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || ||||| |||| | | || | || ||||| |||| ||| || | || | | | Sbjct 106683 TCCTGTCAGCTGTACCGGAGCTCAGGAGACATGGGCCTGGTTGTGCCCTCCAGTGTCACC 106742 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || ||||| ||||| || || | ||| | ||| | |||| | || | |||||| Sbjct 106743 AGCTATGCCCTGCTCACCTACAGGATGGTACACATCACAGGCCTGAAGCCCAATGACTTC 106802 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | || || | ||||| || ||||||||||| | |||| Sbjct 106803 ATACATACTTTGGGAGATGCACATATTTACCTGAGTCAT 106841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399114025913935