Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1096 129 7e-25 seq117 125 9e-24 seq647 93.3 5e-14 seq596 91.5 2e-13 seq859 82.4 1e-10 >seq1096 Length=651278 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| ||||| || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || ||||| || || ||||||||||||||||| ||||||||||||| Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 432294 >seq117 Length=2247267 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 1676741 CTGTTTCTTATACCATA 1676757 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 1681904 CATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTTGCTTCCAAGGCTCCAT 1681963 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | ||| ||||| || ||||| || || ||||| |||| Sbjct 1681964 AATAAATAGTTTCAAAGATTTGCTTGTTTAGTAACTGGGCTTCTGGACTCTCAAAAGGAT 1682023 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || || || || || || | ||| | Sbjct 1682024 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGGCGATGGC 1682083 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 1682084 GTTTATTTGA 1682093 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || ||||| | | Sbjct 1686218 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1686277 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1686278 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1686337 Query 63383 CGGTTCCA 63390 || |||| Sbjct 1686338 AGGCTCCA 1686345 >seq647 Length=3659771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||| ||||||||||| ||| || | ||||| || || |||||||||| || ||| Sbjct 172634 GTTTCTTTCTATGATATATATATTATTCTGCAAGCATTTATACTGACTACTGCCGTATTT 172693 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| | | |||||| ||||| |||||||||||||| ||| ||| | |||| Sbjct 172694 CTTGGTTTGACTGCGTATACTCTGCAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 172752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| |||||||| |||||| Sbjct 160825 TGCTCCTCGATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCTGCCAGTGTGCAC 160884 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 160885 ATCCGAATGG 160894 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 188244 TTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACAGCT 188302 |||||||||||||||||| | |||||| ||| ||| ||| ||||| || | ||| || Sbjct 164170 TTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACAGTGACATCT 164229 Query 188303 GCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACAAGGGAG 188349 | | |||||||||||||| | || ||||||||| |||| | ||| Sbjct 164230 TCTTTTTTTTTATACTTTGAGTCTATACGGACATTTGTACATGAGAG 164276 >seq596 Length=5634117 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 2844344 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 2844285 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 2844284 TACTGGATTGGAAAGATGACAAATC 2844260 >seq859 Length=171326 Score = 82.4 bits (90), Expect = 1e-10 Identities = 139/201 (69%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 31348 TGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 31407 || ||||| || | |||||||| | | || |||| | | || ||||| || |||| ||| Sbjct 16853 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCA 16912 Query 31408 CCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31467 || | ||||| | ||| | ||| ||| ||||| || | || || | |||| Sbjct 16913 CCCTTTTTTACTTCTAACTTTTCTTTGCCAGAATTAAATAGTACAACACCCACATTTCGT 16972 Query 31468 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCA 31524 ||||||||||| ||||| || || ||||||| ||| || | ||| | ||| ||| Sbjct 16973 CTATAATCTTCATCTATGACTCCCCCTCCTACATCTATGAAGTGTTTCGCAGCCAGGCCA 17032 Query 31525 GACCTAGGAGCTATTCTACCA 31545 || | ||||||| ||| ||| Sbjct 17033 GAACGGGGAGCTACTCTTCCA 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629704366668240