Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1096 102 8e-17 seq596 102 8e-17 seq117 93.3 4e-14 >seq1096 Length=651278 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| || ||||| || Sbjct 434578 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 434519 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| || Sbjct 434518 AGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCC 434459 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 434458 ACAACCCGCTCTCC 434445 >seq596 Length=5634117 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 2857575 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 2857516 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| |||||||||||||| || || || ||||| || || || ||||||||||| | Sbjct 2857515 TCAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 2857456 Query 11772 CTAC 11775 | || Sbjct 2857455 CCAC 2857452 >seq117 Length=2247267 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| ||||| ||||| || Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 1676741 CTGTTTCTTATACCAT 1676756 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | |||| Sbjct 1698457 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGATTA 1698516 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | | ||||| || | |||||||||||| | | Sbjct 1698517 TATGTTTCAATAGCAGCATCAATATCTTCTTCATGAATCCCCACAGATACCCTCATCAAC 1698576 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 1698577 ATATGCTGTGGTCTTTC 1698593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468440565097520