Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq647 187 3e-42 seq117 134 2e-26 seq1096 129 8e-25 seq596 91.5 2e-13 >seq647 Length=3659771 Score = 187 bits (206), Expect = 3e-42 Identities = 154/188 (82%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| ||| |||||||||| ||||||| Sbjct 179500 TTTTTATTAACTGCTTCCAAAAACCGCAACAGATGCAGGAATAGATTGATGACATCCAAG 179441 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || || ||||| Sbjct 179440 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAGGGAGTGT 179381 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | ||||| || ||||| |||| Sbjct 179380 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCACAGCAGCCAAGACCAACTCC 179321 Query 9411 ACTGTTTC 9418 |||||||| Sbjct 179320 ACTGTTTC 179313 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||| |||||||| ||||||| | ||||| Sbjct 172752 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGCAGAGTATACGCAGTCAAACCAAGA 172693 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || || ||||||| || | || | ||||||||||| ||| Sbjct 172692 AATACGGCAGTAGTCAGTATAAATGCTTGCAGAATAATATATATATCATAGAAAGAAAC 172634 Score = 105 bits (116), Expect = 9e-18 Identities = 86/102 (84%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 160894 CCATTCGGATGTGCACACTGGCAGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 160835 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGG 9945 | |||||||| | ||| | || |||| | ||||||| ||| Sbjct 160834 TCGAGGAGCAGGGGTACCGGGGGTCGGGGTCGGCCATGTCGG 160793 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797 ||| | |||| || | |||| || | |||||||||||||| | | || ||| | || Sbjct 164276 CTCTCATGTACAAATGTCCGTATAGACTCAAAGTATAAAAAAAAAGAAGATGTCACTGTA 164217 Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAA 9844 ||||| |||| ||| ||| ||||||| | |||||||||||||||||| Sbjct 164216 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAA 164170 >seq117 Length=2247267 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | | Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 1676741 CTGTTTCTTATACCATA 1676757 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | ||||||| | Sbjct 1686218 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACG 1686277 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| Sbjct 1686278 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCA 1686337 Query 66176 CGGTTCCA 66183 || |||| Sbjct 1686338 AGGCTCCA 1686345 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 1704047 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACTGCAATCCTTGCTGCCAGGA 1704106 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1704107 TGGCATAGTCAGGGTGCTTGGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1704166 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||||| || ||||| || ||||| Sbjct 1704167 GTTCCACAGTGGTGACCCCACTATATAAGCCCTGGATTACTTTCAT 1704212 >seq1096 Length=651278 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| ||||| || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| ||||| || || ||||||||||| |||||||| ||||| ||||||| Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 432294 >seq596 Length=5634117 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 2844344 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGGG 2844285 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || |||||||| || ||||||| Sbjct 2844284 TACTGGATTGGAAAGATGACAAATC 2844260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658054468757720