Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq110 143 2e-29 seq307 96.9 3e-15 seq688 82.4 7e-11 >seq110 Length=1713729 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 1660656 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 1660715 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||||||||||||||||||||||||| || || Sbjct 1660716 GTACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGTTCACCGTTCA 1660775 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||| ||||| || | | | || || ||||| || |||||| Sbjct 1660776 CCACGTAGAACTGGCAAAGAGCATGGCACGGAGGCAGGGCCATC 1660819 >seq307 Length=5409467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 206/304 (68%), Gaps = 3/304 (1%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | ||||| ||| ||| | || | | || || || Sbjct 1578344 CTTATAAACAGAACTGCCTCCCACTACCCAAACCATGTCCACTTTATGTGCTAATTCTGG 1578285 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 | || ||| | || || ||||| || || || | || ||||| | | ||| || | Sbjct 1578284 CTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAAGAAAATAAGTTCCTTGTG 1578226 Query 3009 GTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTC 3067 | ||||| | | || ||| || | || ||||||||||||| | | ||| | ||| Sbjct 1578225 GAGGTTCCTGGAGGTTTTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTTGGTTC 1578166 Query 3068 TTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACA 3127 || | || || || |||||||| | | |||||||| |||| ||||| || |||| | Sbjct 1578165 TTCTTGGGAATAGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCT 1578106 Query 3128 ACCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAA 3187 || |||| || | |||||| | || |||||| | | ||| || || || |||||| Sbjct 1578105 ACTGATGAGGTTGTGGTCATTCTTTGGAAATACTTTAATTCATTCCTGAGCGGCGGCCAG 1578046 Query 3188 GGCA 3191 |||| Sbjct 1578045 GGCA 1578042 >seq688 Length=229267 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 21364 CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGG 21423 |||| | | | | |||||| | | |||||| ||||| || || | |||||||| Sbjct 106431 CCAAGAGGTCTCAGGACCCATTTGAGTCCCAGATTTTCACTCCCTTGGAAGACAGTTCCC 106372 Query 21424 TGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACA 21483 | || ||||| ||| |||||||||||||||||||||||| || ||| || | | | Sbjct 106371 AAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCTAGGATA 106312 Query 21484 CCCTTTTGGTGGTTAACAGAGGAAACTCGTCCC 21516 | |||||| || | ||||||||| || |||| Sbjct 106311 CAGGTTTGGTTGTCAGCAGAGGAAATTCATCCC 106279 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| || || || ||||| || || | ||||| || ||||||| |||| ||| Sbjct 106832 GTAAATATGTGCATCTCCCAAAGTATGTATGAAGTCATTGGGCTTCAGGCCTGTGATGTG 106773 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 | ||| || || || ||||| ||||||| || | | || || | |||||||| Sbjct 106772 TACCATCCTGTAGGTGAGCAGGGCATAGCTGGTGACACTGGAGGGCACAACCAGGCCCAT 106713 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACA 21124 ||| | || ||| |||||||||| ||||||||||| || ||| ||| ||||| || Sbjct 106712 GTCTCCTGAGCTCCGGTACAGCTGACAGGACAGCTCACCATTTTCCAGGTAGAACTGGCA 106653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427701013941840