Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1096 141 1e-28 seq117 122 1e-22 seq596 93.3 6e-14 seq859 91.5 2e-13 >seq1096 Length=651278 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| ||||| || || | Sbjct 434580 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGGCCGCGTTTCT 434521 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||||| Sbjct 434520 TGAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 434461 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| | |||||| Sbjct 434460 CCACAACCCGCTCTCC 434445 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | ||||||||||| || ||||| |||||||| ||||| Sbjct 432399 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATCTCAGAATGGATGTTTTCCATGGC 432340 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 432339 AATTTGGAAGCCATAGAAACAGCGGGCTTCAGTAATCTGAACTTCT 432294 >seq117 Length=2247267 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 1676621 ACCTGAAATTCTCCCGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCGATA 1676680 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 1676681 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 1676740 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 1676741 CTGTTTCTTATACCATA 1676757 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || ||||||| | || Sbjct 1686222 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCTCTGGCACGCTGT 1686281 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| || ||| | | ||| || ||||||| || Sbjct 1686282 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAAATGTCTAAATGCCAAGGC 1686341 Query 80059 TCCA 80062 |||| Sbjct 1686342 TCCA 1686345 >seq596 Length=5634117 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| |||||| | Sbjct 2844345 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 2844286 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 2844285 GTACTGGATTGGAAAGATGACAAATC 2844260 >seq859 Length=171326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 47752 TGTACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCT 47811 || |||||||| | |||||||| | | || |||| | | || ||||| || |||| ||| Sbjct 16853 TGAACTTCCTCTATTTCTGGATCAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCA 16912 Query 47812 CCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 47871 ||| | ||||| | ||| | ||| ||| ||||| || | || || | |||| Sbjct 16913 CCCTTTTTTACTTCTAACTTTTCTTTGCCAGAATTAAATAGTACAACACCCACATTTCGT 16972 Query 47872 CTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCA 47928 ||||||||||| ||||| || || ||||||| ||| || | ||| | ||| ||| Sbjct 16973 CTATAATCTTCATCTATGACTCCCCCTCCTACATCTATGAAGTGTTTCGCAGCCAGGCCA 17032 Query 47929 GACCTAGGAGCTATTCTACCA 47949 || | ||||||| ||| ||| Sbjct 17033 GAACGGGGAGCTACTCTTCCA 17053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718139664248120