Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq596 109 5e-19 >seq596 Length=5634117 Score = 109 bits (120), Expect = 5e-19 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 2857575 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 2857516 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || || ||||| || |||||||| | Sbjct 2857515 TCAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCTGCAAAAG 2857456 Query 13293 CTATCAACCTTTCACC 13308 | || |||||| || Sbjct 2857455 C---CACCCTTTCCCC 2857443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 12803 TAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATTTT 12861 |||||||| ||| || | || |||| ||| || || | || |||||| | | Sbjct 2867527 TAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTT-TCTGCCATAACTGCAAAACG 2867469 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || ||||| ||| ||||| || |||||||| ||||| || ||||| ||||| Sbjct 2867468 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCCAAAGAAATGTTTTC 2867409 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||||||||| || ||||||| Sbjct 2867408 CATAAAATCAAAGGGATTTT 2867389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430906851882966