Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq692 143 6e-29 seq596 127 5e-24 seq316 122 2e-22 seq442 116 9e-21 seq331 116 9e-21 seq194 116 9e-21 seq969 113 1e-19 seq102 100 7e-16 seq41 91.5 3e-13 seq1096 89.7 1e-12 seq438 89.7 1e-12 >seq692 Length=1323805 Score = 143 bits (158), Expect = 6e-29 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || ||||||| | ||| | || ||||| Sbjct 819844 ACGAGATGAAGTG--GACTCCTTTTGAATGTTGTAGTCAGGCAAAGTACGTCCATCTTCC 819901 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || | ||||| | ||||||||| ||| |||| ||||||||| Sbjct 819902 AGTTGCTTGCCAGCAAAGATCAAACTCTGCTCATCAGGAGGAATTTCTTCCTTATCCTGA 819961 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| | | |||||| ||||| ||||| ||||| | | || ||||| Sbjct 819962 ATCTTGGCTTTCATACTTTCTATTGTATCCGAGGGTTCAACCTCAACACTGATGGTCTTT 820021 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| ||||| || ||||| ||| Sbjct 820022 CCTGTAAGGGTTTTCACAAAAATTTGCATCTTG 820054 >seq596 Length=5634117 Score = 127 bits (140), Expect = 5e-24 Identities = 110/136 (81%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| || |||||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 2857443 GGGGAAAGG---GTGGCTTTTGCAGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 2857499 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| ||||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 2857500 GCTATATTCTGGCTGAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 2857559 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 2857560 ATCAGCAGAGATGAAG 2857575 >seq316 Length=5774657 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || ||||||||| ||| || ||||| ||| Sbjct 2701265 AGATGAAGAGTGGACTCCTTTTGAATGCTACAGTCAGATAAAGTATGTCCATCTTCCAGT 2701324 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || | || || || || || || ||||||||||| |||||| |||||||||||| Sbjct 2701325 TGCTTGCAAGAGAAGATCAGTCTGTGCTGATCAGGAGGAGTTCCTTTCTTATCCTGAATC 2701384 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||||| ||||| ||||| || || || |||| | Sbjct 2701385 TTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCGAGAGTGATGATCTTCCTC 2701444 Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558 || | ||||| | || ||||||| Sbjct 2701445 ATATGGGTTTTCATGAAAATCTGCA 2701469 >seq442 Length=3727360 Score = 116 bits (128), Expect = 9e-21 Identities = 147/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT-CC 104421 || ||| ||||||| | | || ||||| ||||| | | ||||| || | ||| || Sbjct 3345120 GTTGATCCTTTCTGGGTGCTGTAATCAGAAAGAGTGCGGCTATCTTCCAGCAGCTTTGCC 3345061 Query 104422 AGCAAAAA--TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||| | |||||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 3345060 TGCAAAAAGGTGAGCCTCTGCTGGTCAGGGCAGATCCCTTCTTTATCTTGGATCTTAGCT 3345001 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || || || || ||||| || || || ||||| ||||| || Sbjct 3345000 TTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGG 3344941 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || |||| |||||||| Sbjct 3344940 GTCTTCGCAAACATCTGCAT 3344921 >seq331 Length=2979768 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || ||||| || |||||| | || | || ||||| ||||| || ||||| || || Sbjct 1638149 TTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCCAGTTGCTTGCCAGCCAAGATC 1638204 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || ||||| |||||| |||| |||||||| ||||| || ||||| || |||||||||||| Sbjct 1638205 AGTCTCTGATGATCAAGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCT 1638264 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | |||| ||||| | ||| || || ||| |||| || ||| ||||| | | Sbjct 1638265 ATTATATCCAAGGGTTCAATCTCGAGAGTGATAATCTTCCCCATAAAAGTTTTCATGGAA 1638324 Query 104552 ATCTGCATTTTG 104563 |||||||| ||| Sbjct 1638325 ATCTGCATCTTG 1638336 >seq194 Length=5677166 Score = 116 bits (128), Expect = 9e-21 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||| | || | || ||||| Sbjct 189062 ACAAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCC 189117 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || | ||||| ||||||||| | ||||| ||||||| Sbjct 189118 AGTTGCTTGCCAGCAAAGATCGGTCTCTGCTGATCAGGAAGAGTTCCTG----ATCCTGA 189173 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||||| |||| |||||| ||||| || || || ||||| Sbjct 189174 ATCTTGGCCTTCACATTTTCTATTGTATTTGAAGGTTCAACCTCAAGAGTGATGGTCTTC 189233 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||||| || || ||| || | ||| Sbjct 189234 CCCATAAGAGTTTTCACGAAAATCAGCCTCTTG 189266 >seq969 Length=292708 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || | || ||||| || |||||| | || | || ||||| ||| Sbjct 250777 AGATGAAGAGTGGACTACTTTTGAATGTTGTAGTCAAA----GTACATCCATCTTCCAGT 250832 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||| || || || ||||| |||||| |||| | |||||||||||| || ||| Sbjct 250833 TGCTTGCCAGTGAAGATCAGTCTCTGATGATCAAGAGGAAGTCCTTCTTTATCTTGGATC 250892 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||||| ||||| ||||| | ||| || || ||| |||| || Sbjct 250893 TTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAATCTCAAGAGTGATAATCTTCCCC 250952 Query 104534 GTAAGTGTTTTTACAAATATCTGCA 104558 ||| ||||| | | ||||||| Sbjct 250953 ATAAAAGTTTTCATGGAAATCTGCA 250977 >seq102 Length=2770413 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || || ||||| || ||||||| | || || ||||| | ||| |||||| Sbjct 1921185 GACTCCTTTTGAATGTTGTAGTCAGTCAAAGGATGTCCATCTTCAA-TTGCCGGCCAGCA 1921127 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG-CTTTTAC 104484 | || || ||||| ||| ||||||| ||| |||| |||||||||||||| | |||| || Sbjct 1921126 AGGATCAGTCTCTGCTGAACAGGAGGAATTTCTTCCTTATCCTGAATCTTGGCCTTTAAC 1921067 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 |||| ||| ||||| ||||| ||||| || || || ||||| | |||| |||| Sbjct 1921066 ATTTCCTATTGTATCCAAGGGTTCCACCTCGAGAGTGATGGTCTTCACCCTAAGAGTTTC 1921007 Query 104545 TACAAATATCTGCATTTTG 104563 || | |||| ||| ||| Sbjct 1921006 CACGGAAATCTACATCTTG 1920988 >seq41 Length=3493823 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| |||| || |||||||| || || |||| ||| ||||| |||||||| Sbjct 3080856 CCATCTTCCGGTTGCTT-CCAGCAAAGATCAGTCTCTAATGACCAGGA---ATTCCTTCC 3080801 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||||||||| || || ||||||||| |||| |||| |||| || || Sbjct 3080800 TTATCCTGAATCTTGGCCTTCACATTTTCTGTTGTATTTGAGGGTTTAGCCTCAAGAGTG 3080741 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| | |||| ||||| || || |||||||| Sbjct 3080740 ATGATCTTCTCCATAAGGGTTTTCACGAAAATCTGCAT 3080703 >seq1096 Length=651278 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 435948 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGCAAGACTAACTTCTTT 436007 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 436008 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCAAGTCCAACAGAGAATTCT 436067 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 436068 TTTACCTTGGATGCTGACTTCTAA 436091 >seq438 Length=1899571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | |||||||| | || || | || || | || || ||||| | Sbjct 704965 TGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACCGTATTTTTTATCCTGAGG 704906 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || |||||||||||||| | ||| |||||||| || Sbjct 704905 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACACTG 704846 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| |||| || ||||||| Sbjct 704845 TGGTGGATTGGAATTAAGTGGGTCGCCGGGGGACAAG 704809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151186217784164