Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acinonyx_20jubatus_20[refseq_20GCF_5F001443585.1_202015-11-13] 14,383 sequences; 2,372,553,907 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq143 170 3e-37 >seq143 Length=1398753 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||| || |||| || ||||| |||||| Sbjct 1310992 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1311051 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 1311052 CTGTTGTGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 1311111 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 1311112 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGTGGGTAGATCATCTCG 1311171 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| ||||||| || || || || |||| Sbjct 1311172 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCCCCATCGATTATCT 1311220 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1312289 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 1312348 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| |||||| ||||||| |||||||| | || ||||| ||||| || Sbjct 1312349 AAATTGATGGGTGAAGTGTTGGGCAAAAAATGCAAACATCATATTTGTGCCTTGGGGGTC 1312408 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||||||||||| | | | ||| || || | Sbjct 1312409 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 1312468 Query 10208 ttttttACCTG 10218 ||| || |||| Sbjct 1312469 TTTCTTGCCTG 1312479 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || || || ||| || | Sbjct 1312943 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGCCACAGGGGGAAGAGCTCTGGTA 1313002 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||||||||| || |||||||||||| || | |||||| | ||||| | Sbjct 1313003 TAATAGGAGAGATTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTCCACATTGTAAGTT 1313062 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| || ||||||| || || ||||| Sbjct 1313063 GGTGGGCTCTCGATCAAATGTGACCTGGCTGAA 1313095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708397416097520